Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51690 676 / 0 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT1G62960 599 / 0 ACS10 ACC synthase 10 (.1) AT4G37770 429 / 2e-146 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT2G22810 414 / 1e-140 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT3G49700 413 / 5e-140 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT4G26200 405 / 2e-137 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT5G65800 403 / 3e-136 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT4G08040 383 / 1e-128 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT4G11280 383 / 6e-128 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT1G01480 378 / 5e-126 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117700 [exp] 669 / 0 AT1G62960 664 / 0.0 ACC synthase 10 (.1) Potri.018G067000 [exp] 431 / 1e-147 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.006G149600 [exp] 424 / 4e-145 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.007G007800 [exp] 417 / 1e-141 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.014G012600 [exp] 412 / 1e-139 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G113900 [exp] 407 / 8e-138 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.001G099400 [exp] 405 / 7e-137 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G132300 [exp] 399 / 2e-134 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 399 / 2e-134 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015023 [exp] 740 / 0 AT5G51690 704 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10038899 [exp] 736 / 0 AT5G51690 702 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10006676 [exp] 631 / 0 AT1G62960 620 / 0.0 ACC synthase 10 (.1) Lus10007021 [exp] 626 / 0 AT1G62960 612 / 0.0 ACC synthase 10 (.1) Lus10007223 [exp] 411 / 3e-139 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10008579 [exp] 409 / 6e-139 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10032695 [exp] 408 / 2e-138 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10011565 [exp] 408 / 8e-138 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10039647 [exp] 406 / 7e-137 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10017521 [exp] 395 / 9e-133 AT4G11280 643 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.015G132100.5 pacid=42775735 polypeptide=Potri.015G132100.5.p locus=Potri.015G132100 ID=Potri.015G132100.5.v4.1 annot-version=v4.1 ATGACCCAAACTCTAACACTCCACGAACAACGCACCAACCCGACTCGACAAAAATCCACCGGAATGAGACTCATAGTGCCATTACAAGGCATAGTTCAAG GTAGGGGAGGCCTAATACTAGGTACCTTGATACCTTGTGCTCTTTTTTACTTCTTTCAACTTTACATTAAACGAAACCGTGGTAACAGTTCAAACACTCC ATTGAATCCTCCGTCGCCGTCCAGTTCATCGCCCAACCTCGAGGAGATTCCGAGGACGTCATCCAGGTCGAGTTTTCTCGGTCGGGTGGGGTCGTTTGGT CCGGTGAGTGTATCCGGCAGGGCTAGTTTGATTGTAAGAGGGAATGATTCGCCTTATTATATTGGGTTGGAGAAGGTTGCGGATGATCCATATGAGAAAG CCCGTAACCCGGATGGGATCATTCAACTTGGATTATCAGAGAATAGATTGTGTTTCGATTTGATAGAGAAATGGATGGTGGAGAATGTGAGGGAAGCAAT GGTGGGAAGTGACGGTGAGCATTTGAGTATTAATGGGATCGCGGCGTATCAGCCATCTGATGGATTGATGGAGTTGAAAGTGGCCGTGGCAGGTTTCATG TCTCAGGTGATGGGAAACGTGGTTTCATTTGACCCCTTATCACAGGTGATGGAAAAAGTGGTTTCATTTGACCCCTCACAAATAGTATTGACTGCGGGTG CCACTCCTGCAATTGAGATACTATGCTTCTGCCTGGCAGACCATGGAAATGCATTTCTTATTCCAACGCCTTATTATCCCGGATTTGACAGGGATGTTAG ATTGCGAACAGGAGTGGAGCTAATTCCTGTTCACTGCCGCAGCGCTGACAACTTCTTATTAAGTGTTACTGCTCTTGAACAGGCATACAACCAGGCTAGA AAACGAGGAGTAAAAGTTCGTGGGATTCTGATTTCAAATCCCTCAAATCCTGTTGGCAATATACTTCCATGGCAAACCCTCTATAACATATTAGACTTTG CCCAAGAGAAGAACATCCACATTATCTCTGATGAGATATTCGCTGGGTCTGTGTATGGAAATATGGAGTTTGTGAGCATGGCAGAAATTCTTGAGAAAGA AGAATTTGATAAGAACAGGGTTCATATAATATATGGGCTGTCAAAAGACCTCTGTCTTCCAGGATTTCGGGTTGGGGTTATCTATTCATACAATGAAAAT GTTTTGGCTGCTGCCAAACGGTTAACTAGATTTTCTTCTATTTCTGCTCCAAGCCAGAGGTTGCTGATTTCAATGCTGTCAGACACTAAATTCATTGAAG AATTCATCAAGACTAACAAGCAGAGGATACAGGAATTGCATTATTCTTTTGTTGATGGTCTCAAACAACTGGGAATCCAGTGCATAGAAAGCAGTGCTGG TTTCTACTGCTGGGCTAATATGAGTGGACTAATCCCTTCTTACGGCGAGAAAGGGGAACTTGAGCTATGGGATAAGCTTTTGAATATTGCTAAGGTCAAT GTAACACCTGGTTCAGCTTGTCATTGCATAGAACCAGGATGGTTCCGGTGTTGTTTCACTACCTTAGCTCTAGAAGATATTCCTGTGGTCATGAAACGAA TCCGCAAGGTGGCATAA
AA sequence Show only first row Show all	>Potri.015G132100.5 pacid=42775735 polypeptide=Potri.015G132100.5.p locus=Potri.015G132100 ID=Potri.015G132100.5.v4.1 annot-version=v4.1 MTQTLTLHEQRTNPTRQKSTGMRLIVPLQGIVQGRGGLILGTLIPCALFYFFQLYIKRNRGNSSNTPLNPPSPSSSSPNLEEIPRTSSRSSFLGRVGSFG PVSVSGRASLIVRGNDSPYYIGLEKVADDPYEKARNPDGIIQLGLSENRLCFDLIEKWMVENVREAMVGSDGEHLSINGIAAYQPSDGLMELKVAVAGFM SQVMGNVVSFDPLSQVMEKVVSFDPSQIVLTAGATPAIEILCFCLADHGNAFLIPTPYYPGFDRDVRLRTGVELIPVHCRSADNFLLSVTALEQAYNQAR KRGVKVRGILISNPSNPVGNILPWQTLYNILDFAQEKNIHIISDEIFAGSVYGNMEFVSMAEILEKEEFDKNRVHIIYGLSKDLCLPGFRVGVIYSYNEN VLAAAKRLTRFSSISAPSQRLLISMLSDTKFIEEFIKTNKQRIQELHYSFVDGLKQLGIQCIESSAGFYCWANMSGLIPSYGEKGELELWDKLLNIAKVN VTPGSACHCIEPGWFRCCFTTLALEDIPVVMKRIRKVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Potri.015G132100 [exp]	0	1
AT2G13440			glucose-inhibited division fam...		Potri.005G066300 [exp]	4.24	0.9386
AT1G12800			Nucleic acid-binding, OB-fold-...		Potri.003G124200 [exp]	6.24	0.9438
AT2G36990		SIG6, SIGF, ATS...	SIGMA FACTOR 6, RNApolymerase ...		Potri.006G125700 [exp]	10.67	0.9414	SIGF.1
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.019G014376 [exp]	12.24	0.9268
AT5G02830			Tetratricopeptide repeat (TPR)...		Potri.006G132700 [exp]	14.96	0.9362
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Potri.013G124900 [exp]	18.13	0.9323
AT5G14260			Rubisco methyltransferase fami...		Potri.017G066500 [exp]	18.97	0.9090
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Potri.001G136600 [exp]	21.56	0.9220
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	22.04	0.9284	RSH1.2
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	22.44	0.9325

Compare expression of checked genes

Potri.015G132100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.