Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ERL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62230 1404 / 0 ERL1 ERECTA-like 1 (.1.2) AT5G07180 1387 / 0 ERL2 ERECTA-like 2 (.1) AT2G26330 1154 / 0 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 511 / 3e-164 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 505 / 5e-162 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 499 / 7e-160 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 501 / 3e-159 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 490 / 1e-157 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 482 / 2e-154 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 468 / 4e-149 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130400 [exp] 1685 / 0 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.006G220100 [exp] 1182 / 0 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 509 / 9e-164 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 501 / 1e-160 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G174900 [exp] 499 / 6e-160 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 488 / 2e-155 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 478 / 4e-153 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 481 / 6e-153 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G157300 [exp] 478 / 6e-153 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031689 [exp] 1411 / 0 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10031108 [exp] 1401 / 0 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10038071 [exp] 1140 / 0 AT2G26330 1554 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10009790 [exp] 1110 / 0 AT2G26330 1547 / 0.0 QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 518 / 2e-168 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036251 [exp] 485 / 7e-153 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10019248 [exp] 477 / 4e-152 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 469 / 7e-149 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10018911 [exp] 470 / 1e-148 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 468 / 9e-148 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G132200.1 pacid=42775523 polypeptide=Potri.015G132200.1.p locus=Potri.015G132200 ID=Potri.015G132200.1.v4.1 annot-version=v4.1 ATGAAACTACTAGGGGGTTTTGAGCAATGTTTGGCAATGGCTGTGGTGCTTTTACTATTTCTGTTTCCTCTCGTTTCACCACTTAACGATGAGGGGAAAG CTTTGATGTCTATAAAGGAATCTTTCAGCAATGTTGTTAATGTGCTTGTTGACTGGGATGATGTGCACAATGAAGATTTCTGTTCTTGGCGCGGTGTGTT TTGTGACAATGACAGCTTCTCTGTTGTTTCTCTTAACCTGTCAAATTTGAACCTTGGTGGTGAAATTTCTCCTGGCATTGGAGATTTGAGGAACTTGCAA TCCATAGACTTCCAAGGGAATATGTTGACTGGTCAAATCCCAGAAGAGATTGGCAATTGTGCTTCTTTATACCATCTGGATCTTTCTGGTAACTTGCTTT ATGGTGACATTCCCTTTTCTCTATCAAAGTTGAAGCAACTTGATACCTTAAATTTGAAGAACAACCAGCTTACTGGTCCTATCCCTTCAACCTTAACCCA AATTCCGAATCTGAAAACACTTGACCTTGCTAAAAACCAGCTGACTGGTGAGATACCAAGATTGATATACTGGAATGAAGTCTTACAATACCTTGGATTA CGCGGCAATTTGTTGACTGGAACATTGTCAGAAGATATCTGTCAGTTGACTGGCTTGTGGTACTTTGATGTGAGAGACAATAAACTAACTGGCACCATCC CCAGTAGCATTGGCAACTGTACTAGCTTTGAGATACTGGATATATCATACAATCAGTTTACTGGGGAGATACCATACAATATTGGCTTCTTGCAAGTTGC TACGCTGTCTCTTCAAGGGAATAATCTCACTGGGAGGATTCCAGAGGTTATTGGTTTAATGCAGGCCCTTGCTGTTCTGGATTTGAGTGACAATGAGCTA GTTGGACCAATTCCCGCAATACTAGGCAATTTGTCATACACTGGGAAACTGTATCTTCATGGAAACAAGCTCACTGGACCAATTCCCCCAGAACTTGGAA ATATGTCAAAGCTAAGCTATTTGCAATTGAATGACAACCAACTGGTTGGCAGCATTCCTCCTGAACTTGGGAAGCTGGGACAGTTGTTTGAATTGAATCT TGCTAACAACCATCTTGAAGGGCCCATTCCACACAACATCAGTTTTTGCAGGGCATTGAATCAATTCAACGTGCATGGTAATCACTTGAGTGGAATCATA CCTTCAGGTTTCAAGGATCTTGAGAGCTTGACTTACTTAAATCTCTCATCAAACGACTTCAAAGGCAGTGTTCCTGTTGAGCTGGGACGCATAATCAATT TGGATACATTGGATCTCTCAAGCAATAACTTTTCGGGGCCCATTCCAGCTATGATTGGTGACCTGGAGCACCTTCTCACCTTGAATTTGAGCAGGAATCA TCTTCATGGACGATTGCCTGCTGAATTTGGGAATCTAAGAAGTATACAAATTATTGATTTGTCTTTCAACAACGTGACTGGTAGCATTCCAGTGGAATTG GGTCAGCTGCAAAACATTGTTTCTCTGATCCTGAACAACAATGACTTGCAAGGAGAAATCCCTGAGCTTACCAATTGTTTCAGCCTTGCCAATTTGAATT TCTCATACAACAATTTATCAGGAATTGTGCCACCTATTAGAAACTTGACACGGTTTCCACCAGACAGCTTTATTGGAAATCCTTTGTTGTGTGGCAACCG GTTGGGATCAATATGTGGCCCCTATGTCCCAAAGTCTAAAGTAATCTTCTCTAGAGCAGCAGTTGTCTGTATAACGCTGGGATTCATAACATTATTGTCC ATGATTATAGTTGCGATTTACAAATCCAACCAACAGAAACAATTGACGAAGAGATCCAACAAAACTGTACAAGGTCCTCCAAAACTTGTGGTTCTTCACA TGGACATGGCTATTCACACCTTTGATGACATAATGAGGAACACAGAGAATTTAAGTGAGAAGTATATTATAGGTTATGGTGCTTCTAGCACAGTATACAA GTGTGTGCTGAAAAATTCCCGGCCACTTGCAATTAAGCGACTCTACAATCAGTATACATGCAACTTGCACGAGTTTGAAACTGAACTTGAGACCATTGGC AGCATCAGACACCGAAATATAGTCAGCTTACATGGTTATGCACTGTCTCCTCGTGGAAACCTTCTCTTTTATGACTATATGGAGAATGGTTCTCTGTGGG ATCTGCTTCATGGACCATCCAAAAAGGTAAAGCTTGACTGGGAAACACGCTTGAAAGTAGCAGTTGGAGCTGCTCAAGGACTTGCTTATCTTCACCATGA TTGCAACCCTCGAATCATCCACAGGGATGTGAAATCCTCAAATATCTTGCTGGATGAGAATTTTGAAGCTCACTTGTGTGATTTTGGAATTGCTAAATGC ATCCCAACCACAAAAACTCATGCCTCAACTTTTGTTATGGGTACTATTGGCTACATTGATCCAGAGTATGCCCGCACATCTCGGCTAACTGAAAAATCAG ATGTTTATAGCTTTGGCATTGTCCTCTTGGAGCTTCTTACTGGGAAGAAGGCTGTGGATAACGAGTCTAATTTACAGCAGCTGATTTTATCGAGGGCTGA TGATAACACTGTAATGGAAGCTGTTGACCCAGAAGTTTCTGTTACATGCATGGATTTGACCCATGTAAAGAAGAGTTTCCAACTAGCACTATTGTGCACC AAGCGCCATCCCTCAGAGAGACCAACCATGCAGGATGTGTCCAGGGTCTTAGTATCATTTGTTCCAGCTCCTACAAAAGCTTCTCTTCTTCCAAAGCCTT TTGACTATGCCAAATTTGTCATGGACAAAGGACAGCAGCAGCCAACACTTCACCAGCCACAACTTCTGCAGGAAAACAACTCTTCTGATGCACATTGGTT CATGAGGTTCAAAGAAGTTGTGTCAAAGAATACTCTCTAA
AA sequence Show only first row Show all	>Potri.015G132200.1 pacid=42775523 polypeptide=Potri.015G132200.1.p locus=Potri.015G132200 ID=Potri.015G132200.1.v4.1 annot-version=v4.1 MKLLGGFEQCLAMAVVLLLFLFPLVSPLNDEGKALMSIKESFSNVVNVLVDWDDVHNEDFCSWRGVFCDNDSFSVVSLNLSNLNLGGEISPGIGDLRNLQ SIDFQGNMLTGQIPEEIGNCASLYHLDLSGNLLYGDIPFSLSKLKQLDTLNLKNNQLTGPIPSTLTQIPNLKTLDLAKNQLTGEIPRLIYWNEVLQYLGL RGNLLTGTLSEDICQLTGLWYFDVRDNKLTGTIPSSIGNCTSFEILDISYNQFTGEIPYNIGFLQVATLSLQGNNLTGRIPEVIGLMQALAVLDLSDNEL VGPIPAILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLVGSIPPELGKLGQLFELNLANNHLEGPIPHNISFCRALNQFNVHGNHLSGII PSGFKDLESLTYLNLSSNDFKGSVPVELGRIINLDTLDLSSNNFSGPIPAMIGDLEHLLTLNLSRNHLHGRLPAEFGNLRSIQIIDLSFNNVTGSIPVEL GQLQNIVSLILNNNDLQGEIPELTNCFSLANLNFSYNNLSGIVPPIRNLTRFPPDSFIGNPLLCGNRLGSICGPYVPKSKVIFSRAAVVCITLGFITLLS MIIVAIYKSNQQKQLTKRSNKTVQGPPKLVVLHMDMAIHTFDDIMRNTENLSEKYIIGYGASSTVYKCVLKNSRPLAIKRLYNQYTCNLHEFETELETIG SIRHRNIVSLHGYALSPRGNLLFYDYMENGSLWDLLHGPSKKVKLDWETRLKVAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFEAHLCDFGIAKC IPTTKTHASTFVMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGKKAVDNESNLQQLILSRADDNTVMEAVDPEVSVTCMDLTHVKKSFQLALLCT KRHPSERPTMQDVSRVLVSFVPAPTKASLLPKPFDYAKFVMDKGQQQPTLHQPQLLQENNSSDAHWFMRFKEVVSKNTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.015G132200 [exp]	0	1	Pt-ERL1.1
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179700 [exp]	4.69	0.8649	Pt-PNFT3.2
					Potri.004G156500 [exp]	7.93	0.9120
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G118100 [exp]	8.24	0.8986
AT5G10770			Eukaryotic aspartyl protease f...		Potri.016G000600 [exp]	9.74	0.8479
AT3G06868			unknown protein		Potri.008G220700 [exp]	16.43	0.8744
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.004G139700 [exp]	22.91	0.8550	FLS4,Pt-FLS.4
					Potri.001G259904 [exp]	27.83	0.8818
					Potri.001G259220 [exp]	28.61	0.8813
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Potri.010G002000 [exp]	32.52	0.8172	Pt-PDK.1
AT5G22390			Protein of unknown function (D...		Potri.009G162800 [exp]	38.23	0.8292

Compare expression of checked genes

Potri.015G132200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.