Plant FIBer expression Database

PBS2.1 (Potri.015G132300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PBS2.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51700 290 / 3e-100 ATRAR1, RPR2, PBS2 Required for Mla12 resistance 1, PPHB SUSCEPTIBLE 2, protein binding;zinc ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031107
[exp]
293 / 7e-102 AT5G51700 288 / 1e-99 Required for Mla12 resistance 1, PPHB SUSCEPTIBLE 2, protein binding;zinc ion binding (.1)
Lus10031688
[exp]
276 / 5e-95 AT5G51700 286 / 7e-99 Required for Mla12 resistance 1, PPHB SUSCEPTIBLE 2, protein binding;zinc ion binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04968 CHORD CHORD
Representative CDS sequence
>Potri.015G132300.1 pacid=42775441 polypeptide=Potri.015G132300.1.p locus=Potri.015G132300 ID=Potri.015G132300.1.v4.1 annot-version=v4.1
ATGGACCAAACCGAGGTACCTAAGCTTCGCTGCCAGCGAATCGGCTGTGACGCAACTTTCACCGAAGACAACAATCCCGATGGTTCCTGTACTTACCATG
ATTCGGGGCCTTTCTTTCATGATGGAATGAAAGAGTGGAGTTGTTGCAAGAAAAGGAGTCATGATTTCAGCTTGTTTCTGGAGATTCCAGGATGTAAAAC
AGGTAAACACACAACTGAGAAACCAGTGTTAGCAAAGGCGACTCCAACTCCCACCCCAAAGAATCCATTTTCTCCTCCCACTGCAGCTCCTGCTACCAAC
TCATCCTCAAAGGAATCTTGCCCTAGATGCAAGCAAGGCTTTTTTTGCTCAGATCATGGGTCACAAGCACAACCCAAAGCTGCACCAGCTAAAAGCTATG
CTTCTGCTCCAGCAAAAAAGGTAGTTGATATAAACCAGCCCCAGACGTGCAAGAATCAGGGATGTGGTCAAACTTTCAAGGAGAAGGATAATCATGAAAC
TGCCTGTAATTACCATCCCGGGCCTGCTGTTTTTCATGATCGAATGAGAGGGTGGAAGTGTTGTGACATCCATGTAAAGGAGTTTGATGAATTCATGAGC
GTTCCACCTTGCAGCAAGGGCTGGCACGATGCTGATCCAGCATCTTAA
AA sequence
>Potri.015G132300.1 pacid=42775441 polypeptide=Potri.015G132300.1.p locus=Potri.015G132300 ID=Potri.015G132300.1.v4.1 annot-version=v4.1
MDQTEVPKLRCQRIGCDATFTEDNNPDGSCTYHDSGPFFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLAKATPTPTPKNPFSPPTAAPATN
SSSKESCPRCKQGFFCSDHGSQAQPKAAPAKSYASAPAKKVVDINQPQTCKNQGCGQTFKEKDNHETACNYHPGPAVFHDRMRGWKCCDIHVKEFDEFMS
VPPCSKGWHDADPAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G51700 ATRAR1, RPR2, P... Required for Mla12 resistance ... Potri.015G132300
[exp]
0 1 PBS2.1
AT5G58110 chaperone binding;ATPase activ... Potri.006G080900
[exp]
4.35 0.8583
AT1G22840 CYTC-1, ATCYTC-... CYTOCHROME C-A, CYTOCHROME C-1... Potri.019G076001
[exp]
6.24 0.8073
AT5G08290 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, m... Potri.007G072700
[exp]
10.72 0.7936
AT5G10730 NAD(P)-binding Rossmann-fold s... Potri.006G268000
[exp]
14.42 0.7863
AT4G02450 HSP20-like chaperones superfam... Potri.002G061500
[exp]
15.32 0.7519
AT5G10830 S-adenosyl-L-methionine-depend... Potri.005G067500
[exp]
16.30 0.8052
AT3G25230 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rota... Potri.002G248300
[exp]
23.02 0.8346
Potri.010G182150
[exp]
23.06 0.7973
AT1G23100 GroES-like family protein (.1) Potri.008G130500
[exp]
23.91 0.8496
AT3G46460 UBC13 ubiquitin-conjugating enzyme 1... Potri.010G206832
[exp]
24.67 0.7819

Potri.015G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.