Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51710 791 / 0 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT5G11800 601 / 0 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT2G19600 599 / 0 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT4G00630 99 / 3e-21 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT1G01790 96 / 4e-20 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G04850 88 / 4e-18 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT1G64170 44 / 0.0003 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130500 [exp] 932 / 0 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.006G230400 [exp] 592 / 0 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.018G054100 [exp] 590 / 0 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.014G080800 [exp] 97 / 1e-20 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 95 / 6e-20 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 87 / 1e-17 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031106 [exp] 773 / 0 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10031687 [exp] 707 / 0 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10040549 [exp] 570 / 0 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008002 [exp] 513 / 2e-176 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10007999 [exp] 382 / 5e-128 AT2G19600 569 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008000 [exp] 115 / 4e-29 AT5G51710 149 / 3e-42 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10020485 [exp] 82 / 4e-16 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10007104 [exp] 80 / 2e-15 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10018844 [exp] 62 / 9e-10 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10017823 [exp] 46 / 8e-05 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.015G132400.1 pacid=42775917 polypeptide=Potri.015G132400.1.p locus=Potri.015G132400 ID=Potri.015G132400.1.v4.1 annot-version=v4.1 ATGAAAAGAGGAGGTTTTGCGTATGGATTTGGATTCAGCAGGTGTTTTTGTTTGCTCTTGATTTTGATATGTGTAAATGGGAGATCTGATAAGGAAGTAA GAGAGAGGTTTTATGGGAATTTGGTGAATTCATCAGCACCAGATAATGGAGAAGGAAGTATTGCTAAAATGTTTGATCGTGTTCTTGAAAAAGAGTTCTC TGAAAATGATCAGCCTGAAGGTTCTGATAGAAACAGCTTCAACAACAGTGTAGCTGACCAACAAGCTGTATTGGAGACTGTAGCAAAAATAACTCACGAC AAGGGCAAAAAAAATGATACACAAGTGGCCAATGGAACTAGACCTTTTCAACTTCAAGATGTATTTTCTCTAGAAAATGAGGAATCCGAGGATACAGAAA CCCTGATTGACAAAAAGGATAATGTATTTGTCATGTCAAACAAGAAATCCAAGTACCCAATACTTCAAGTAGATGTGAGACTAATTTCAGATCTAGTTGT TGCTATAGTTTCTGCTGCCATCGGAGGAATCATCTCTTCTTGTTTGGGTCAACCGGTTATCGTTGGCTATCTTCTAGCAGGTTCCATCATCGGACCAGGT GGTCTAAATTTCATCAGTGAGATGGTACAGGTTGAAACTGTTGCACAGTTTGGTGTTGTGTTTCTTCTTTTTGCTTTAGGGCTGGAGTTTTCTTTGACTA AGCTAAAAGTGGTGGGCCCTGTCGCTATTCTTGGAGGGATGCTTCAAATTGTAATATTTATTTGCTTGTGTGGCATAATTTCTGTGTTGTGTGGAGCAAA GTTATCTGAGGGTGTATTTGTGGGTTCCTTCCTGTCAATGTCATCAACAGCAGTGGTGGTGAAATTTTTGATGGAACGTAACAGTAGTAGTTCTCTTCAT GGTCAAGTGACGATTGGGACACTGATTTTTCAGGATTGTGCTGTTGGTTTATTATTTGCATTGCTTCCAGTTTTGGGTGGCAACAGTGGTGCTATACAAG GAATGATTTCAATGGGGAAGTTGTTGTTGGTCTTGTCCTTATACCTCATGGCTGCATCTTTCTTGTCCTGGTCATTTGTTCCTCGCTTTCTTAAGTTAAT GATACAGCTATCATCTCAAACAAGTGAACTCTACCAGCTTGCTGCTGTGGCTTTCTGCTTGTTGTCTGCTTGGTGCAGTGACAAGCTGGGCCTTAGTCTT GAGTTGGGTTCTTTCATGGCTGGAGTCATGATATCTACCACTGACTTTGCACAGCATACTTTAGAACAGGTGGAACCAATCAGGAACCTGTTTGCAGCTC TCTTTCTTTCTAGCATTGGAATGCTCATAAATGTACATTTTCTATGGAACCATGTGGATATATTGCTAGCATCTGTGATTCTGGTTATAGTTGTCAAGAC AACCATTGCTGCTGCAGTTACTAAAGCCTTTGGATATAGCATTAGGACATCATTCCTCGTTGGAGTATTACTTGCTCAAATTGGAGAATTTGCTTTTGTT CTCCTAAGTCGTGCCTCAAATCTTCATCTTGTTGAGGGAAAGATGTATCTTCTTCTTCTTGGAACAACAGCTCTCAGTCTGGTGACTACTCCTCTCCTGT TCAAATTGATTCCTAACGTCATGAATTTGGGTGTCCTTTTGCAATGGTTTCCATCCGAGAGTAGCACTCCAAATAAATGGTTTCCATCGGAGAATGGTAC TCCAAATGAGGAAAGAGTTTCCATGATTGAAGTGCGTAACAGATAG
AA sequence Show only first row Show all	>Potri.015G132400.1 pacid=42775917 polypeptide=Potri.015G132400.1.p locus=Potri.015G132400 ID=Potri.015G132400.1.v4.1 annot-version=v4.1 MKRGGFAYGFGFSRCFCLLLILICVNGRSDKEVRERFYGNLVNSSAPDNGEGSIAKMFDRVLEKEFSENDQPEGSDRNSFNNSVADQQAVLETVAKITHD KGKKNDTQVANGTRPFQLQDVFSLENEESEDTETLIDKKDNVFVMSNKKSKYPILQVDVRLISDLVVAIVSAAIGGIISSCLGQPVIVGYLLAGSIIGPG GLNFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGPVAILGGMLQIVIFICLCGIISVLCGAKLSEGVFVGSFLSMSSTAVVVKFLMERNSSSSLH GQVTIGTLIFQDCAVGLLFALLPVLGGNSGAIQGMISMGKLLLVLSLYLMAASFLSWSFVPRFLKLMIQLSSQTSELYQLAAVAFCLLSAWCSDKLGLSL ELGSFMAGVMISTTDFAQHTLEQVEPIRNLFAALFLSSIGMLINVHFLWNHVDILLASVILVIVVKTTIAAAVTKAFGYSIRTSFLVGVLLAQIGEFAFV LLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGVLLQWFPSESSTPNKWFPSENGTPNEERVSMIEVRNR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Potri.015G132400 [exp]	0	1
AT2G17530			Protein kinase superfamily pro...		Potri.007G063100 [exp]	2.44	0.8692
AT4G24910			Protein of unknown function (D...		Potri.015G096900 [exp]	2.82	0.8927
AT5G10020			Leucine-rich receptor-like pro...		Potri.005G083000 [exp]	3.87	0.8318
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	5.29	0.8862
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.012G006200 [exp]	6.00	0.8828
AT5G23870			Pectinacetylesterase family pr...		Potri.012G142300 [exp]	6.32	0.8769
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109200 [exp]	7.93	0.8841
AT2G27930			PLATZ transcription factor fam...		Potri.006G119400 [exp]	12.12	0.8642
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	13.41	0.8577
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.002G199600 [exp]	14.45	0.8259

Compare expression of checked genes

Potri.015G132400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.