Plant FIBer expression Database

Potri.015G132700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62200 204 / 2e-67 Embryo-specific protein 3, (ATS3) (.1)
AT2G41475 173 / 2e-55 Embryo-specific protein 3, (ATS3) (.1)
AT5G62210 137 / 7e-41 Embryo-specific protein 3, (ATS3) (.1)
AT5G07190 113 / 2e-31 ATS3 seed gene 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G130800
[exp]
207 / 1e-69 AT5G62200 150 / 6e-47 Embryo-specific protein 3, (ATS3) (.1)
Potri.001G193500
[exp]
197 / 8e-65 AT5G62200 184 / 1e-59 Embryo-specific protein 3, (ATS3) (.1)
Potri.018G131800
[exp]
189 / 8e-62 AT2G41475 197 / 5e-65 Embryo-specific protein 3, (ATS3) (.1)
Potri.006G069800
[exp]
187 / 1e-60 AT2G41475 194 / 1e-63 Embryo-specific protein 3, (ATS3) (.1)
Potri.015G132900
[exp]
181 / 4e-58 AT5G62200 153 / 4e-47 Embryo-specific protein 3, (ATS3) (.1)
Potri.012G130900
[exp]
175 / 9e-56 AT5G62200 154 / 1e-47 Embryo-specific protein 3, (ATS3) (.1)
Potri.010G214400
[exp]
85 / 8e-21 AT5G62200 93 / 7e-24 Embryo-specific protein 3, (ATS3) (.1)
Potri.003G107100
[exp]
42 / 5e-05 AT4G39730 166 / 1e-52 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027387
[exp]
238 / 1e-80 AT5G62200 225 / 1e-75 Embryo-specific protein 3, (ATS3) (.1)
Lus10031684
[exp]
236 / 4e-80 AT5G62200 223 / 5e-75 Embryo-specific protein 3, (ATS3) (.1)
Lus10019416
[exp]
154 / 1e-47 AT2G41475 179 / 7e-58 Embryo-specific protein 3, (ATS3) (.1)
Lus10009020
[exp]
44 / 3e-05 AT2G22170 186 / 2e-60 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Lus10043273
[exp]
0 / 1 AT2G41475 107 / 7e-32 Embryo-specific protein 3, (ATS3) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0321 PLAT PF01477 PLAT PLAT/LH2 domain
Representative CDS sequence
>Potri.015G132700.1 pacid=42776414 polypeptide=Potri.015G132700.1.p locus=Potri.015G132700 ID=Potri.015G132700.1.v4.1 annot-version=v4.1
ATGAGAAACTCCCATCATTCTCTCCTCTCTTACTTTGCCTTCTTTTTTGTTCTTGGCCTATCACAAGCTGATCAATCAATAATCAGCCACCTCCAGCCTC
AACCGCTTGAGTCTTTCAATCTCAGTTTAGTCCAGAATGCAGGGAGCTGTTACTACACGGTGCTTATCTCAACAAGCTGTTCCTCTCCAAGATATACTCG
TGATCAGATCGGTATTTCTTTTGGTGATGCTTATGGCAATCAGATTTATACACCAAGGTTGGATGATCCATCAACAGGAACATTTGAACGGTGTTCCTCC
GATACATTTCAGATATCTGGACCATGTGCATATCAGATATGTTATGTCTATCTCTACAGAAGTGGACGAGATGGTTGGAAGCCTGACACTGTGCAGATTT
CTGGTTATTATTCGAGGACTGTTACATTTACTTACAATACCTTCATCCCCAGAGATGTTTGGTATGGCTTTAATTTGTGCCAGAATGCCTCTTCTGCGCT
TCAGCAACGAATTCCAAAATGGTTTATGTTCGTGATTCTTGCAGTTCTTGCTAGTTTCATATTCTAA
AA sequence
>Potri.015G132700.1 pacid=42776414 polypeptide=Potri.015G132700.1.p locus=Potri.015G132700 ID=Potri.015G132700.1.v4.1 annot-version=v4.1
MRNSHHSLLSYFAFFFVLGLSQADQSIISHLQPQPLESFNLSLVQNAGSCYYTVLISTSCSSPRYTRDQIGISFGDAYGNQIYTPRLDDPSTGTFERCSS
DTFQISGPCAYQICYVYLYRSGRDGWKPDTVQISGYYSRTVTFTYNTFIPRDVWYGFNLCQNASSALQQRIPKWFMFVILAVLASFIF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62200 Embryo-specific protein 3, (AT... Potri.015G132700
[exp]
0 1
AT5G22400 Rho GTPase activating protein ... Potri.006G211200
[exp]
1.41 0.9022
AT1G77220 Protein of unknown function (D... Potri.002G071400
[exp]
1.73 0.8707
AT2G21940 ATSK1 shikimate kinase 1 (.1.2.3.4.5... Potri.007G081000
[exp]
6.00 0.8728 SK3
AT5G01520 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2... Potri.016G115300
[exp]
6.32 0.8696
AT4G00755 F-box family protein (.1.2) Potri.014G076300
[exp]
7.74 0.8660
AT1G24120 ARL1 ARG1-like 1 (.1) Potri.010G036200
[exp]
8.36 0.8672
Potri.016G052100
[exp]
12.12 0.8566
AT3G10410 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CAR... Potri.008G034800
[exp]
12.64 0.8546
AT2G40470 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LO... Potri.013G156200
[exp]
13.78 0.8385
AT4G22950 MADS AGL19 AGAMOUS-like 19 (.1) Potri.015G098400
[exp]
13.96 0.7660 CUS3.2

Potri.015G132700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.