Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYP96.4,CYP96A16v2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 589 / 0 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G23180 578 / 0 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39480 548 / 0 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT2G21910 546 / 0 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT1G47620 538 / 0 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT1G65340 527 / 0 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT4G39510 525 / 0 CYP96A12 "cytochrome P450, family 96, subfamily A, polypeptide 12", cytochrome P450, family 96, subfamily A, polypeptide 12 (.1) AT4G32170 525 / 0 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT4G39500 511 / 3e-179 CYP96A11 "cytochrome P450, family 96, subfamily A, polypeptide 11", cytochrome P450, family 96, subfamily A, polypeptide 11 (.1) AT1G57750 511 / 8e-179 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G080300 [exp] 662 / 0 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G397900 [exp] 512 / 7e-179 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G064400 [exp] 512 / 7e-179 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.008G125300 [exp] 494 / 3e-172 AT4G39490 410 / 4e-139 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 460 / 2e-158 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.005G094500 [exp] 426 / 2e-145 AT1G47620 372 / 7e-124 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) Potri.007G072100 [exp] 414 / 7e-140 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 411 / 2e-138 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.015G087000 [exp] 397 / 7e-135 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002527 [exp] 444 / 5e-152 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022279 [exp] 442 / 1e-151 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 429 / 4e-146 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10017394 [exp] 404 / 2e-135 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 401 / 1e-134 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 398 / 1e-133 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10002525 [exp] 397 / 1e-133 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022277 [exp] 395 / 6e-133 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10035234 [exp] 392 / 1e-131 AT4G39490 382 / 1e-127 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10028047 [exp] 382 / 4e-128 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.015G132800.1 pacid=42775118 polypeptide=Potri.015G132800.1.p locus=Potri.015G132800 ID=Potri.015G132800.1.v4.1 annot-version=v4.1 ATGGCTTCAGTAGTCCTCTTTGAAATCTTCTTTGCTTTCATTTGCTTTCTCAGCCTGATCTTTTGCTTAAGAAAAAATAATGGCCTTCCAAAGAACTGGC CACTCATTGGCATGCTGCCTGGCCTCCTCTTCCAAGTCCACCGGTTTCATGACTGGGTCACAGATGTTTTAGAGCAAAGCAAGTGTACTTTCCAATTCAA AGGCCCTTGGTTTGGTGACATGGACATTTTGGTCACGGCTGATCCAGCCAACATACACTACATAACGAGCTCAAATTTTTCCAATTTTGAAAAAGGGTCG GATTTCAATAAAAGATTCGATATTCTGGGAGATGGGATAATCAATGCAGACAGGGATTTGTGGAAAAGCCAGAGGAAAGTTGCTCAAGCATTGGTCAATC ATCGGTTGTTCTACCAACGCTTGGTTAAGACTATCCAAGATAAGGTGGAAAGGGGCCTAATTCCAGTCCTTGAGCACGTGTATAAACAAAGCCTAGTGCT GGACTTGCAGGATTTGTTCCAAAGATTCACCTTTGATGCTACATGCGTGATTGTGACCGGCTTCGACCCCGGATGCCTCTCTATTGATTTACCAGAAGTT GCTTTCTCGAAAGCTATGGATAATGCTATGGAAGCAATATTTTATCGACATGTTTTGCCAGAGAGCACTTGGAGGTTGCAAAGATGGCTAGGAATTGGAA AAGAGAAGAAACTTAAGAAAGCTCGGGAAACACTTGATCGCATAATAGCCGAAATTATATCGATGAAGAGAGAAGAATTGAGCAAAGGAAACAGATTAAT GGAAGAGGATGGAGAAGGTATTGATTTGTTAACTTCATACATGAGTGAAGATTATAATATGGGATTTAAATCAGATGATGAGTTTCTAAGAGACACCATT GTAACTTTCATGCTTGCTGGACGAGACACTGTAAGTTCATGTCTGTCTTGGTTTTTCTGGCTTGTCTCAAAGAATCCAGCAGCAGGCGCCAAGATTAGAG AAGAGCTGAAAACAACTCTACCGGAAAAAGAAGCTGAAAAACGGAGGCTATTTGACATAGAAGAGATAAAAAAGCTGGTTTATCTACATGGGGCGTTGTG TGAATCTTTAAGGCTCTACCCACCGATTCATTCTGAATTCAAGTCCCCTGTAAGACAAGACATCCTTCCAAGCGGTCACCGAGTCAATCCAAAGACGAAA ATCGTGTTTTCTTTATATGCAATGGGAAGGATGAGTTCAGTATGGGGAGACGATTGCTTCGAATTTAAGCCTGAAAGGTGGATTACAGACAGAGGAGGGA TGAAACATGAGCCATCTTACAAGTTTTTTTCTTTCAATGCAGGACCTAGGACTTGTCTTGGAAAGGATGTGGCTTTCACTCAAATGAAGGCAGTTGTAGC TGCTATAATCTACAATTATCAGGTTCAAGTAGTAGATGAACATACTGTAACCCCTAGCCAGTCCGTTATTCTTCACATGAAGCATGGCATGAAAGTTAAG CTTACTAAGAGATGGGCTTGA
AA sequence Show only first row Show all	>Potri.015G132800.1 pacid=42775118 polypeptide=Potri.015G132800.1.p locus=Potri.015G132800 ID=Potri.015G132800.1.v4.1 annot-version=v4.1 MASVVLFEIFFAFICFLSLIFCLRKNNGLPKNWPLIGMLPGLLFQVHRFHDWVTDVLEQSKCTFQFKGPWFGDMDILVTADPANIHYITSSNFSNFEKGS DFNKRFDILGDGIINADRDLWKSQRKVAQALVNHRLFYQRLVKTIQDKVERGLIPVLEHVYKQSLVLDLQDLFQRFTFDATCVIVTGFDPGCLSIDLPEV AFSKAMDNAMEAIFYRHVLPESTWRLQRWLGIGKEKKLKKARETLDRIIAEIISMKREELSKGNRLMEEDGEGIDLLTSYMSEDYNMGFKSDDEFLRDTI VTFMLAGRDTVSSCLSWFFWLVSKNPAAGAKIREELKTTLPEKEAEKRRLFDIEEIKKLVYLHGALCESLRLYPPIHSEFKSPVRQDILPSGHRVNPKTK IVFSLYAMGRMSSVWGDDCFEFKPERWITDRGGMKHEPSYKFFSFNAGPRTCLGKDVAFTQMKAVVAAIIYNYQVQVVDEHTVTPSQSVILHMKHGMKVK LTKRWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.015G132800 [exp]	0	1	Pt-CYP96.4,CYP96A16v2
AT2G01900			DNAse I-like superfamily prote...		Potri.018G144101 [exp]	6.00	0.9395
AT3G16660			Pollen Ole e 1 allergen and ex...		Potri.010G012400 [exp]	15.36	0.9461
AT5G05800			unknown protein		Potri.011G125150 [exp]	16.97	0.9171
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G158900 [exp]	18.30	0.9440
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G156038 [exp]	20.78	0.9423
AT1G78850			D-mannose binding lectin prote...		Potri.011G110500 [exp]	22.97	0.9380
					Potri.002G227701 [exp]	23.23	0.9446
					Potri.005G211050 [exp]	40.97	0.9282
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.006G248000 [exp]	44.72	0.9386
					Potri.001G284032 [exp]	46.31	0.9350

Compare expression of checked genes

Potri.015G132800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.