Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62200 154 / 2e-47 Embryo-specific protein 3, (ATS3) (.1) AT2G41475 123 / 1e-35 Embryo-specific protein 3, (ATS3) (.1) AT5G62210 117 / 7e-33 Embryo-specific protein 3, (ATS3) (.1) AT5G07190 113 / 3e-31 ATS3 seed gene 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G130900 [exp] 265 / 4e-91 AT5G62200 154 / 1e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.015G132700 [exp] 164 / 2e-51 AT5G62200 204 / 1e-67 Embryo-specific protein 3, (ATS3) (.1) Potri.006G069800 [exp] 137 / 1e-40 AT2G41475 194 / 1e-63 Embryo-specific protein 3, (ATS3) (.1) Potri.001G193500 [exp] 134 / 7e-40 AT5G62200 184 / 1e-59 Embryo-specific protein 3, (ATS3) (.1) Potri.018G131800 [exp] 132 / 4e-39 AT2G41475 197 / 5e-65 Embryo-specific protein 3, (ATS3) (.1) Potri.012G130800 [exp] 110 / 3e-31 AT5G62200 150 / 6e-47 Embryo-specific protein 3, (ATS3) (.1) Potri.010G214400 [exp] 73 / 6e-16 AT5G62200 93 / 7e-24 Embryo-specific protein 3, (ATS3) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027387 [exp] 159 / 2e-49 AT5G62200 225 / 1e-75 Embryo-specific protein 3, (ATS3) (.1) Lus10031684 [exp] 158 / 6e-49 AT5G62200 223 / 5e-75 Embryo-specific protein 3, (ATS3) (.1) Lus10019416 [exp] 123 / 1e-35 AT2G41475 179 / 7e-58 Embryo-specific protein 3, (ATS3) (.1) Lus10043273 [exp] 0 / 1 AT2G41475 107 / 7e-32 Embryo-specific protein 3, (ATS3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [poplar] [flax] PLAT PF06232 [poplar] [flax] ATS3 Embryo-specific protein 3, (ATS3)
Representative CDS sequence Show only first row Show all	>Potri.015G132900.1 pacid=42776514 polypeptide=Potri.015G132900.1.p locus=Potri.015G132900 ID=Potri.015G132900.1.v4.1 annot-version=v4.1 ATGAGGAGAGCCCATTGCACTTTTCTGCTTTGCTTTGCCTTCGTTTTTGCTGTTCTGTCAAAAGCTGATCAACCGATCAACAAGTTCCAGCCTCATGTTC ACAAGGCTTTCACTCCCGGTTTAATCCAGCAGACTGTAGGGAGCAGCTGTGCTTACACGGTTGTTATTTCGACAAGCTGTTTATCACCCAAATATACAAC TGATCAGATCAGTATTATTTTCGGTGATGCTTTTGGCAATCAGGTTTATGATTCGAAGCTGGTTAATCCATTTACGATCACATTCGAACAATGTTCGACA AACACATTTCAGGTAACTGGATCATGTTCACTTGAGATATGTTATCTCTATTTCTACAGAAATGGAACAGTTGGTTGGATTCCACAAAGCGTGGAGATTT ATGGTTCATTTTCAACTCCTGCCGTGTTTTTCTTCAATTCAACCACCGTTCCTGAAGGTGAATGGTATGGAATTAACAAGTGCCAGAACTTTCCTAGTGC CCCTCCTCCTTCTTCAGCACTACGGCTACAGATTATTCCTGGATGGTTTTTGTACTTGATTCTAGGGATTCTTGCTACTTCCATATTTTTATCCTATTAA
AA sequence Show only first row Show all	>Potri.015G132900.1 pacid=42776514 polypeptide=Potri.015G132900.1.p locus=Potri.015G132900 ID=Potri.015G132900.1.v4.1 annot-version=v4.1 MRRAHCTFLLCFAFVFAVLSKADQPINKFQPHVHKAFTPGLIQQTVGSSCAYTVVISTSCLSPKYTTDQISIIFGDAFGNQVYDSKLVNPFTITFEQCST NTFQVTGSCSLEICYLYFYRNGTVGWIPQSVEIYGSFSTPAVFFFNSTTVPEGEWYGINKCQNFPSAPPPSSALRLQIIPGWFLYLILGILATSIFLSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132900 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066600 [exp]	1.73	0.9854
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120700 [exp]	2.82	0.9845
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.002G018300 [exp]	4.00	0.9733	CADL2
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066800 [exp]	4.24	0.9791
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066900 [exp]	5.91	0.9660
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171268 [exp]	6.32	0.9705
AT1G49660		ATCXE5	carboxyesterase 5 (.1)		Potri.009G103800 [exp]	6.32	0.9625
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171100 [exp]	8.77	0.9552
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171156 [exp]	9.79	0.9539
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171128 [exp]	10.58	0.9420

Compare expression of checked genes

Potri.015G132900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.