Plant FIBer expression Database

Potri.015G133500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28100 500 / 1e-174 ATFUC1 alpha-L-fucosidase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G131400
[exp]
860 / 0 AT2G28100 506 / 6e-177 alpha-L-fucosidase 1 (.1)
Potri.009G006900
[exp]
480 / 1e-166 AT2G28100 704 / 0.0 alpha-L-fucosidase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031681
[exp]
712 / 0 AT2G28100 485 / 2e-168 alpha-L-fucosidase 1 (.1)
Lus10027390
[exp]
692 / 0 AT2G28100 476 / 6e-165 alpha-L-fucosidase 1 (.1)
Lus10021427
[exp]
473 / 6e-164 AT2G28100 671 / 0.0 alpha-L-fucosidase 1 (.1)
Lus10016140
[exp]
462 / 4e-160 AT2G28100 644 / 0.0 alpha-L-fucosidase 1 (.1)
Lus10027391
[exp]
130 / 2e-36 ND 44 / 4e-06
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF01120 Alpha_L_fucos Alpha-L-fucosidase
Representative CDS sequence
>Potri.015G133500.1 pacid=42774824 polypeptide=Potri.015G133500.1.p locus=Potri.015G133500 ID=Potri.015G133500.1.v4.1 annot-version=v4.1
ATGGGTAAGTTACAGTGTTTTTTGTTCATAATCACATTGCTTCAAGTTTCAAAACTTGTCATTTCAGAACGTGATCAAGTCACTACACCTCCATTACCAA
TCCTACCATTACCATCATTTTCTCAATTGAAATGGCAAGAAAGGGAACTCATTGTGTTTCTTCACTTTGGTGTCAACACATTCACTGATTCTGAATGGGG
CACTGGTCATGAAAACCCTGCTATTTTCAATCCTGTTGGCCTTAATGCTAACCAATGGGTAAAAGTGGCAGCAGAAGCTGGATTTTCTCTCATGATATTA
ACTGCAAAGCACCATGATGGATTCTGCTTGTGGCCTAGTAAATACACTGGCCATTCCGTGGAAAGCAGTCCATGGAAAAACGGGCATGGAGATGTTGTCC
AAGAACTTGTCAATGCAGCCAAGAATCATGGTGGGATTGACGTGGGACTGTATCTTTCTCCATGGGATAGGCATGACAAAAGATATGGTAATGATTTGGA
GTACAATGGATACTACATGGCTCAATTGCAAGAACTTCTTAACAAGTATGGGAGTATTAGAGAGATATGGTTTGATGGTGCAAAAGGTTCAAATGCACCA
AACATGTCATATTATTTCTCAGATTGGTTTTCAATGGTGAAAGAGTTGCAAGCTTCTATCAACATATTTTCCGACGCCGGCCCGGACGTTAGATGGGTTG
GAAATGAAAATGGTTTTGCCGGAGATTCTTGTTGGTCCACCATCAATAGGACCTCACTCTCAATCGGAAATGGAAGCATTGTTGATTATCTTAACACCGG
AGACCCAGAGGGGACAGATTGGCTGCCAGCAGAATGTGATGTTTCAATCCGAAGAGGATGGTTTTGGCACAAGTCAGAATCACCGAAGAAGTTAAGCATG
TTACTTGACATATATTACAAATCGGTCGGACGAAACTGTGTCCTATTATTCAATGTGCCCCCAAATTCAACAGGCCTTGTGTCTGAGGATGATGCACAAA
GATTGAGGGAGTTTAGAGGTGCAATTGACACAATATTTTCTACAAATTTAGCTGACAAGTGTCTTACAAAAGCTAGCAGCCAAAGAGGGGACCAGGATAG
CGATTTCGGGCCCCAAAATGTGCTAGATAGTGACCATTTGTGGACTTATTGGGCACCAAAAGATGAAGAGTTCAAAGATAATTGGATTGAGATCAAATGC
ATCGATGAATTAAGATTTAATGTAATTAGAATCCAAGAGGCAATTGGTCTTGGTCAAAGGATCAAACAACATGAAGTTTATGTGGATGGTAAGAAGGTTG
CTAAAGGTACGACAGTAGGGCACAAGAGGCTTCATAGGATTGAAGAGGGAGTTGTTAAGGGTCGGACTGTGAGGATTCAGATTCTCAAATCAAGAGCAGT
GCCATTGATCTCTTCTGTTGGTTTGCATTACGACCCTTTTTGGCACCCAGATAATTAA
AA sequence
>Potri.015G133500.1 pacid=42774824 polypeptide=Potri.015G133500.1.p locus=Potri.015G133500 ID=Potri.015G133500.1.v4.1 annot-version=v4.1
MGKLQCFLFIITLLQVSKLVISERDQVTTPPLPILPLPSFSQLKWQERELIVFLHFGVNTFTDSEWGTGHENPAIFNPVGLNANQWVKVAAEAGFSLMIL
TAKHHDGFCLWPSKYTGHSVESSPWKNGHGDVVQELVNAAKNHGGIDVGLYLSPWDRHDKRYGNDLEYNGYYMAQLQELLNKYGSIREIWFDGAKGSNAP
NMSYYFSDWFSMVKELQASINIFSDAGPDVRWVGNENGFAGDSCWSTINRTSLSIGNGSIVDYLNTGDPEGTDWLPAECDVSIRRGWFWHKSESPKKLSM
LLDIYYKSVGRNCVLLFNVPPNSTGLVSEDDAQRLREFRGAIDTIFSTNLADKCLTKASSQRGDQDSDFGPQNVLDSDHLWTYWAPKDEEFKDNWIEIKC
IDELRFNVIRIQEAIGLGQRIKQHEVYVDGKKVAKGTTVGHKRLHRIEEGVVKGRTVRIQILKSRAVPLISSVGLHYDPFWHPDN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28100 ATFUC1 alpha-L-fucosidase 1 (.1) Potri.015G133500
[exp]
0 1
AT4G17690 Peroxidase superfamily protein... Potri.012G076500
[exp]
7.48 0.6208
AT3G59670 unknown protein Potri.019G112201
[exp]
33.88 0.5752
AT2G12646 PLATZ transcription factor fam... Potri.018G116000
[exp]
39.23 0.5998
AT3G04280 ARR22 response regulator 22 (.1.2.3) Potri.003G177400
[exp]
42.42 0.5609
AT2G34930 disease resistance family prot... Potri.001G043800
[exp]
51.80 0.6079
AT1G03220 Eukaryotic aspartyl protease f... Potri.005G095600
[exp]
53.23 0.5878
AT5G44265 Bifunctional inhibitor/lipid-t... Potri.002G012300
[exp]
76.03 0.5424
AT5G25190 AP2_ERF ESE3 ethylene and salt inducible 3,... Potri.018G021900
[exp]
121.95 0.5669
AT5G05800 unknown protein Potri.004G230401
[exp]
131.73 0.5128
AT1G66240 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.... Potri.008G023800
[exp]
141.47 0.5285

Potri.015G133500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.