Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68530 419 / 1e-142 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G25450 416 / 7e-142 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT1G19440 413 / 3e-140 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT1G01120 409 / 2e-138 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G16280 407 / 1e-137 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT2G26640 391 / 1e-131 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT4G34510 389 / 3e-131 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G15090 379 / 3e-127 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT2G46720 378 / 4e-127 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT4G34520 378 / 1e-126 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G125300 [exp] 426 / 1e-145 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.008G120300 [exp] 422 / 5e-144 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.002G178000 [exp] 404 / 3e-136 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G196200 [exp] 402 / 5e-136 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.009G116700 [exp] 401 / 1e-135 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.004G155600 [exp] 398 / 2e-134 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.014G104300 [exp] 398 / 4e-134 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.018G032200 [exp] 392 / 6e-132 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 390 / 5e-131 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034319 [exp] 428 / 2e-146 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Lus10041452 [exp] 427 / 6e-146 AT1G25450 890 / 0.0 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) Lus10001657 [exp] 412 / 8e-140 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002691 [exp] 410 / 5e-139 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10012611 [exp] 409 / 3e-138 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002533 [exp] 405 / 2e-137 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 405 / 5e-137 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 405 / 5e-137 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10010108 [exp] 401 / 3e-135 AT1G01120 868 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10030209 [exp] 398 / 3e-134 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.015G133700.1 pacid=42775915 polypeptide=Potri.015G133700.1.p locus=Potri.015G133700 ID=Potri.015G133700.1.v4.1 annot-version=v4.1 ATGACAGCTGACTCTCTCCCCATCCCTCTATCTCTCTCAATGGAACCTCTTTCTAAGGCCAACCACGGCCCTCACTCTCTGCTATTCAAGCATCTCCTCT CAACTCTCTTGGAAGTTCTAAGACTTTCCACTCTTGCACTTGTGATTTCACTAGAAGCAATCTTTATCCTTCAAAAATGGAAACCCATTTTCCATTTCCT CTTGCTTTCTATTTTCCTTTTCATTTTTATCATCGAACCCTACTTCCTAAGTTCCACTCCAGTCTACCTTGTAGACTTCTCATGTTTCAAACCACCAAAT TTCTGTAAAGTCCCCCCCTCTTCTTTCCTTGAAAATGCATCAAAGATTGGGTCTTTTGATAAAGAAAGTGTAGCTTTCATGGCCAAAATCCTCACTTCTT CTGGTCTAGGTGAAGAAACTTATCTCCCTCCAGCCTTACACTGCATTCCGCCAAAATCCCATCAACAAGAATCCATTAAAGAGGCTGAAATGGTTCTGCT TCCCATCATGGAAGACCTCCTCTCCAAAACTAAAATCTCTCCTCAAGATATTGATATACTTATAGTGAACTGTAGTGGCTTCTGTCCTTCACCTTCCCTG TCATCCATAATCATCAACAAGTTCTCCATGAGAGATGATGTAAGAAGTTTTAGCCTTTCTGGTATGGGTTGTGGTGCAGGAGCTATAGCCATTGACATGG CTCAGAACCTCTTGAAGGTTCACAAGAACTCCTATGCCGTTGTTCTTAGCACTGAAATCTTATCTACCGGTTGGTATCCTGGTCATGAGAGATCCAAGCT ACTCCTTAACTGTAGCTTTAGAATGGGAAGTGCTGCCATCTTGCTTACAAACAAAAATGAAGCCAGAAAGTCATCAAAATACAAGCTTTTTTCATCAGTA AGAACCCAAAGATCCTTTGAAGACAAGAGCTACATGTCTGCATTTCGTGAAGAAGATTCTGAAGGAAAAATTGGGGTTACAATCCACAGCGATGTGTTCC AAGTTTTTGGAGAAGTTCTCAGGTTTAATATAAAAATTCTTGGTGCACAGATCTTGCCTCCTTTGGAAAAATTTTGGCATGGCGTTTCAACAATTAGAAA GAGATTTTTTGAAAAGTCAAGGGAGATTTATGTGCCAAATTTTAAGAGCGTGATACACCATTTTTGCTTGCCAACTTCAGGGAGGCCACTAATTAGAGAG ATTGCAAAAGGGTTGAAGCTTGGTGAGAATGAAGATGAGGCTGCTTTGATGACACTCCACAGGTTTGGAAACCAGTCTTCTTCTTCGCTGTGGTATGAGC TGGCTTATATGGAAGCTAAGGGGATGGTCAAGAAAGGTGACAAGGTGTGGGTACTTGGGATGGGAACTGGGCCAAAATGTTGTAGTCTGGTCTGGGAATG TTTTCGGCCCATAGTTGATGAGTCCAGTAAAGGCCCATGGGCTGACTCAATCGATCGATATCCCATCACCCCTTAG
AA sequence Show only first row Show all	>Potri.015G133700.1 pacid=42775915 polypeptide=Potri.015G133700.1.p locus=Potri.015G133700 ID=Potri.015G133700.1.v4.1 annot-version=v4.1 MTADSLPIPLSLSMEPLSKANHGPHSLLFKHLLSTLLEVLRLSTLALVISLEAIFILQKWKPIFHFLLLSIFLFIFIIEPYFLSSTPVYLVDFSCFKPPN FCKVPPSSFLENASKIGSFDKESVAFMAKILTSSGLGEETYLPPALHCIPPKSHQQESIKEAEMVLLPIMEDLLSKTKISPQDIDILIVNCSGFCPSPSL SSIIINKFSMRDDVRSFSLSGMGCGAGAIAIDMAQNLLKVHKNSYAVVLSTEILSTGWYPGHERSKLLLNCSFRMGSAAILLTNKNEARKSSKYKLFSSV RTQRSFEDKSYMSAFREEDSEGKIGVTIHSDVFQVFGEVLRFNIKILGAQILPPLEKFWHGVSTIRKRFFEKSREIYVPNFKSVIHHFCLPTSGRPLIRE IAKGLKLGENEDEAALMTLHRFGNQSSSSLWYELAYMEAKGMVKKGDKVWVLGMGTGPKCCSLVWECFRPIVDESSKGPWADSIDRYPITP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.015G133700 [exp]	0	1
					Potri.014G007300 [exp]	35.49	0.8431
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Potri.016G037300 [exp]	36.46	0.7636	Pt-ORG2.3
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.003G079100 [exp]	68.37	0.8229
AT4G19380			Long-chain fatty alcohol dehyd...		Potri.004G234900 [exp]	83.07	0.8020
					Potri.005G038350 [exp]	152.00	0.7813
AT2G33880	HD	WOX9A, STIP, WO...	WUSCHEL related homeobox 9A, W...		Potri.011G061400 [exp]	164.67	0.7724
AT3G49810			ARM repeat superfamily protein...		Potri.002G116500 [exp]	165.77	0.7760

Compare expression of checked genes

Potri.015G133700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.