Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25390 536 / 0 Protein kinase superfamily protein (.1.2) AT5G51770 502 / 4e-170 Protein kinase superfamily protein (.1) AT2G45590 486 / 2e-163 Protein kinase superfamily protein (.1) AT1G80870 176 / 1e-46 Protein kinase superfamily protein (.1) AT3G58690 146 / 4e-38 Protein kinase superfamily protein (.1) AT5G15730 141 / 5e-36 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT3G24540 142 / 6e-36 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G79620 144 / 2e-35 Leucine-rich repeat protein kinase family protein (.1) AT3G20530 137 / 3e-35 Protein kinase superfamily protein (.1) AT3G24550 141 / 6e-35 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131900 [exp] 1041 / 0 AT4G25390 486 / 5e-164 Protein kinase superfamily protein (.1.2) Potri.002G150800 [exp] 591 / 0 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.014G072900 [exp] 579 / 0 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.003G183100 [exp] 172 / 3e-45 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 166 / 4e-43 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 140 / 5e-36 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.011G131200 [exp] 140 / 1e-35 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.011G036466 [exp] 139 / 1e-35 AT1G11340 411 / 1e-136 S-locus lectin protein kinase family protein (.1) Potri.013G025700 [exp] 139 / 2e-35 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027393 [exp] 704 / 0 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041395 [exp] 532 / 0 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10031678 [exp] 350 / 9e-116 AT2G45590 263 / 6e-83 Protein kinase superfamily protein (.1) Lus10036533 [exp] 339 / 1e-108 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10031679 [exp] 330 / 1e-108 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10026069 [exp] 256 / 2e-75 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10036534 [exp] 134 / 4e-37 AT2G45590 161 / 1e-47 Protein kinase superfamily protein (.1) Lus10021003 [exp] 143 / 2e-36 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10008540 [exp] 140 / 6e-36 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10033606 [exp] 140 / 8e-36 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G134100.1 pacid=42775378 polypeptide=Potri.015G134100.1.p locus=Potri.015G134100 ID=Potri.015G134100.1.v4.1 annot-version=v4.1 ATGCCATCGCGCCCAATCCCTCCTTTACTCCCACCCCAACCTCCCCCTCTCCTCCCCCCCCACCACCACCCTTCCCGCCTCATAGCTCCCCTCGCCGCAG CCACCGCAGCCGCCTTCTCCGTCCTCGTCCTCTTCGTCATCTGCTTCCGCAAAATCACTCGTAAACGCACTGTCCCTACCGACTTCTCCAAACCCCCGCA CGGATTCTCCTACACCACTCTCCGCCGCGCCACGAATAACTTCTCCCCTTCTCTTCGCTTAGGCCAAGGTGGGTTTGGCTCAGTTTATCATGGAACTCTT CCTAATGAGTTCAACGTTGCTGTTAAAGTTATGGACTTGGGGTCTCTCCAAGGGGAAAGAGAGTTCCAAAACGAGTTGCTTTTTGCTTCAAAGCTTGATT CTTCTTATATTGTTGCAGCTATTGGTTTTTCCTATGATAGGAAGCATCGTAGTTTGTTGTTAGTGTATGATCTTATGCAAAATGGGAACTTGCAGGATGC TTTACTTCATAGGAAATGCGTGGAGTTGGTTGATTGGAATAAAAGATTTAGCATTGCTGTTGATATTGCTAAAGGGATTGAGTATCTTCATGGTTTGGAC CCACCTGTTATTCATGGAGATATTAAGCCTAGTAATATCTTACTTGATCAGTGTTTTAATGCAAAGGTTGCTGATTTTGGATTAGCTTGGTTGAAGATAG ATCAGAGTAATCAGAATGATCAGAAGCAGTGTGAGGTTAAGGGGGAAGAGAGTGATAAAATAAATGGTGGGTTGGAGTTGAAAAGGGCTGAATTAGAGAG TAATAACGGGGGTGATGATTATGGATCTGTTGTGGAGGATACTGAGAGTGTGACTACTGGGTTTGACGAGTTTCATTTTGGGGTGGATCAGTCGCCGGTT TGTATGACTTCACCAGAGACTTTGGAGGCTGTGAGTGCTTCTCCGGAGGCTGGTGGTGTGGGGGTTTTTCCGGAGGGGAATTTGGATGGGGGTAGTATTG AGGGTGGGAAAGAATTGGTTAATGGGGAGAAAGGGAGTGAGAAAGGGACAAAGAGTGTGTCTCGAAAGGATTGGTGGTGGAAGCAAGAAAATGGTGGCGC GACCGCGGAGAACAGGGGAGTGAAGGATTATGTGATGGAATGGATTGGAACGGAGATAAAGAAGGAGAGACCAAATAGTGACTGGATTGGAGCTTCATCG TCATCAAATAGTCAGCCTGTTGGGAAAATAGATAAGAAGAAGAATCGAAAGAGATTGGATTGGTGGGTTTCATTAGATGATGATAACGATGAGAAGGTTT CGAAGAAGGAGAAGAGAAGGCTGCCGAGGGAATGGTGGAAGGAGGAGTATTGTGAAGAGTTAGAAAAAAAGAACAAGAAGAAGAAAAAGAAGAAGAGAGA AATGGGGATGACTAGTGATGGCAATAATGAAGCAGAAGATTGGTGGCCAAGAGATGTGGAAATGTACGGTGAGAGAAAGAAGAAGAGGAGTAAGAGTAGA GGTAGCAGGGGCAGTATTGAATGGTTTAGCGGTGAGCTATTTAGAGGTAACCGGAATAACCATGATTCTTTGAGCGGAGAGATACCAAAGAGTAGTGGAA TCAGTAGTACACCAAGCATGAGAGGAACTGTTTGTTATGTTGCCCCTGAGTATGGTGGTGGGGGGAATTTATCAGAGAAGTCTGATGTGTATAGCTTTGG AGTTTTATTGTTAGTTCTTATTGCTGGGAGGCGTCCACTCCAGGTTACTACCTCACCAATGTCTGAATTTCAGCGTGCGAATCTAATGCATTGGGCTCGT AATCTTGCCCGTGCTGGAAAACTTCTTGATTTGGTTGACAAGTCTGTACAGTCTTTGGATCGGGACCAAGCTACATTATGCATCACTGTTGCTCTTATTT GTTTGCAAAAGTCACCTGCTCACCGTCCCTCAATGAAGGAGGTTGTGGGGATGCTCACTGGAGAGTCACAGGCGCCTCAATTACCAACTGAATTTTCTCC TTCACCTCCCACACGGGTCCCTTTCAAGTCCAAACCACATAAGAAGGTTCGGTAA
AA sequence Show only first row Show all	>Potri.015G134100.1 pacid=42775378 polypeptide=Potri.015G134100.1.p locus=Potri.015G134100 ID=Potri.015G134100.1.v4.1 annot-version=v4.1 MPSRPIPPLLPPQPPPLLPPHHHPSRLIAPLAAATAAAFSVLVLFVICFRKITRKRTVPTDFSKPPHGFSYTTLRRATNNFSPSLRLGQGGFGSVYHGTL PNEFNVAVKVMDLGSLQGEREFQNELLFASKLDSSYIVAAIGFSYDRKHRSLLLVYDLMQNGNLQDALLHRKCVELVDWNKRFSIAVDIAKGIEYLHGLD PPVIHGDIKPSNILLDQCFNAKVADFGLAWLKIDQSNQNDQKQCEVKGEESDKINGGLELKRAELESNNGGDDYGSVVEDTESVTTGFDEFHFGVDQSPV CMTSPETLEAVSASPEAGGVGVFPEGNLDGGSIEGGKELVNGEKGSEKGTKSVSRKDWWWKQENGGATAENRGVKDYVMEWIGTEIKKERPNSDWIGASS SSNSQPVGKIDKKKNRKRLDWWVSLDDDNDEKVSKKEKRRLPREWWKEEYCEELEKKNKKKKKKKREMGMTSDGNNEAEDWWPRDVEMYGERKKKRSKSR GSRGSIEWFSGELFRGNRNNHDSLSGEIPKSSGISSTPSMRGTVCYVAPEYGGGGNLSEKSDVYSFGVLLLVLIAGRRPLQVTTSPMSEFQRANLMHWAR NLARAGKLLDLVDKSVQSLDRDQATLCITVALICLQKSPAHRPSMKEVVGMLTGESQAPQLPTEFSPSPPTRVPFKSKPHKKVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25390			Protein kinase superfamily pro...		Potri.015G134100 [exp]	0	1
AT5G45790			Ubiquitin carboxyl-terminal hy...		Potri.016G030300 [exp]	2.00	0.8373
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Potri.006G148400 [exp]	4.58	0.8506
AT2G31240			Tetratricopeptide repeat (TPR)...		Potri.002G039801 [exp]	5.00	0.8110
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	9.48	0.8103
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.015G095500 [exp]	10.24	0.8265
AT5G27330			Prefoldin chaperone subunit fa...		Potri.005G040500 [exp]	11.18	0.7653
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	21.35	0.8250
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.005G060100 [exp]	22.04	0.6981
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	23.47	0.7603
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	24.65	0.8044

Compare expression of checked genes

Potri.015G134100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.