Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51780 143 / 1e-42 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51790 141 / 1e-41 bHLH bHLH120 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25410 141 / 2e-41 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25400 133 / 5e-39 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G62975 112 / 7e-30 bHLH bHLH125 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12540 111 / 2e-29 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 47 / 3e-06 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G20970 42 / 9e-05 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 42 / 0.0004 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 40 / 0.001 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132000 [exp] 319 / 6e-111 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G113400 [exp] 160 / 1e-48 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132100 [exp] 160 / 1e-48 AT4G25410 120 / 3e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134400 [exp] 139 / 2e-40 AT5G51790 107 / 2e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G053400 [exp] 62 / 2e-11 AT4G20970 160 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G044400 [exp] 61 / 3e-11 AT4G20970 150 / 3e-46 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 51 / 3e-07 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.019G034700 [exp] 49 / 4e-07 AT4G20970 104 / 5e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G079100 [exp] 48 / 8e-07 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031677 [exp] 169 / 9e-52 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 169 / 1e-51 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 122 / 7e-34 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007049 [exp] 120 / 1e-32 AT1G62975 138 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 112 / 8e-30 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031675 [exp] 85 / 2e-19 AT4G25400 94 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027396 [exp] 81 / 7e-18 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006707 [exp] 73 / 8e-16 AT1G62975 89 / 8e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004574 [exp] 44 / 6e-05 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 44 / 0.0001 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G134300.1 pacid=42776025 polypeptide=Potri.015G134300.1.p locus=Potri.015G134300 ID=Potri.015G134300.1.v4.1 annot-version=v4.1 ATGTTCCCTTTACACCAAGGTGGTGAGCTGTGCTTCAAGATTTCCTCCAGTCCACACCAGCAAGACAATATCCCAGATCTGATTCTTGCTCATCAATATG CTGAAATCCATGGCAGTACTGATATAACCAACAATATGGAGAAAGGTCGGCGGCGAAATATAATTTCCATGGACAATAATGAGGCTGCTAGAGATAATAA TAACAATAGTAAGAAGAAGATGATGCATAGAGATATTGAAAGACAAAGGAGGCAAGAAATGACAACCCTTTATGCATCCCTTCGAGCTTTACTTCCTCTT GAATTTATCAAGGGAAAGCGTTCGATTTCAGATCACATGAACGAGGCAGTGAATTATATAAAGTATCTCCAAAAGAAGATCAAAGAAACTAGTGCCAAAA GAGATGAGTTAAAGAAACTATCCGATTTCAGTTCTGTTGCCTCACCAAGTGGATGTTCTAACAAATCTTCTTCAAGTTCAGTAGCTCTCCAGCCATATCC AGGTGGTATTGAGATTACGTTTGATAGTGATTTAATGGGGAGAGATTTGCCCCTATCAAGAGTATTGCAAGTGTTGCTTGAAGAAGGAATTTCTGTTATC AACTGTGTTTCCACCAAAGTAAATGAAAGATTATTCCACTCTGTCCAAACTGAGGTCAATGATCCTACATGCTTAAATTTATCCGAGCTGTGGCAGAAAT TAACCCTAGTAGTTTCTTCTACAAGTGATTTATCCAAGTGA
AA sequence Show only first row Show all	>Potri.015G134300.1 pacid=42776025 polypeptide=Potri.015G134300.1.p locus=Potri.015G134300 ID=Potri.015G134300.1.v4.1 annot-version=v4.1 MFPLHQGGELCFKISSSPHQQDNIPDLILAHQYAEIHGSTDITNNMEKGRRRNIISMDNNEAARDNNNNSKKKMMHRDIERQRRQEMTTLYASLRALLPL EFIKGKRSISDHMNEAVNYIKYLQKKIKETSAKRDELKKLSDFSSVASPSGCSNKSSSSSVALQPYPGGIEITFDSDLMGRDLPLSRVLQVLLEEGISVI NCVSTKVNERLFHSVQTEVNDPTCLNLSELWQKLTLVVSSTSDLSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Potri.015G134300 [exp]	0	1
					Potri.019G017300 [exp]	3.46	0.9306
					Potri.018G119300 [exp]	3.46	0.9375
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.012G132000 [exp]	4.79	0.9445
AT5G50710			unknown protein		Potri.012G101800 [exp]	5.29	0.9159
					Potri.004G036350 [exp]	9.05	0.8856
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.006G277000 [exp]	9.16	0.9342
AT3G20340			unknown protein		Potri.011G139400 [exp]	10.09	0.8797
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.002G109601 [exp]	13.74	0.9226
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.012G132100 [exp]	14.86	0.9168
AT5G02220			unknown protein		Potri.010G201900 [exp]	15.23	0.8763

Compare expression of checked genes

Potri.015G134300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.