Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51790 107 / 2e-28 bHLH bHLH120 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25410 105 / 1e-27 bHLH bHLH126 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G25400 99 / 2e-25 bHLH bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 92 / 8e-23 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G62975 92 / 5e-22 bHLH bHLH125 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12540 83 / 7e-19 bHLH bHLH055 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41240 45 / 2e-05 bHLH bHLH100 basic helix-loop-helix protein 100 (.1.2) AT5G04150 42 / 0.0002 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132100 [exp] 338 / 2e-118 AT4G25410 120 / 3e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134300 [exp] 146 / 4e-43 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132000 [exp] 141 / 2e-41 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G113400 [exp] 110 / 3e-29 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099500 [exp] 48 / 2e-06 AT4G20970 83 / 2e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G079100 [exp] 45 / 1e-05 AT4G20970 105 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G099400 [exp] 43 / 5e-05 AT4G20970 85 / 2e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027396 [exp] 138 / 9e-40 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031675 [exp] 131 / 2e-37 AT4G25400 94 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 116 / 3e-31 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 114 / 1e-30 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007049 [exp] 102 / 1e-25 AT1G62975 138 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027395 [exp] 96 / 2e-23 AT5G51780 138 / 9e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031676 [exp] 92 / 2e-22 AT5G51780 119 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011172 [exp] 60 / 8e-11 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006707 [exp] 50 / 1e-07 AT1G62975 89 / 8e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G134400.1 pacid=42776163 polypeptide=Potri.015G134400.1.p locus=Potri.015G134400 ID=Potri.015G134400.1.v4.1 annot-version=v4.1 ATGTTTCCATTCCAACAAAGTTATGATGAATTTTGGTCCCAAATCTCCTCTAATCCCTACCAAGAAGATATTGATCAAGATCAGCATCAGATCTTGGGCC AAGATTCCCTTCATGGAATTAGTAACCTAAACAACTCATCAGTGGAAGAAGTCCCGCAGGCACATACAATATTAGCAACTTCAAATGCTAATGATGATAG TGGAAATATTAGATGTGATGAGAAGAAGGTTGCTCGAAAGGAAATCGAACGGCAAAGGAGGCAACAAATGTCCACTCTTCATGCCTCACTTCGAAACCTC CTCCCTCCTGATTCAATCAAGGGAAGGCGCTCAATTTCTGATCACATGAGTGAGGCTGTGAAATGTATTAAGCATCTAAAGAGTAACATCCAAGATTTAA GTGTCAAGAGAGATAAGCTCAAGAACTTGTCCAGCTCAAGTACTTTTGAGCACGGGACTGAGATTTCAGACCATAATTTGCTGGACAGTGTTACGGTCCG CCATTATTTGGATGGATTGGAGATTGTTTTAACTAGAGGCCCTGGAGAGGAAGGGATTCTTCTATCAAGAGTGCTAGAAGCAGTGCTTGAAGAGGGATTT GATGTTGTTGGATGTACTTCAACCCAAAAAGGTCAAAGGCACTATACCACTATCCAATGTCAGGCTAGCAATCTGAATTGCATTGATGCAGATAGGCTGA AAGGGAAGCTAATTGATGTGATCTCATTGTCAAGATATGAGTGA
AA sequence Show only first row Show all	>Potri.015G134400.1 pacid=42776163 polypeptide=Potri.015G134400.1.p locus=Potri.015G134400 ID=Potri.015G134400.1.v4.1 annot-version=v4.1 MFPFQQSYDEFWSQISSNPYQEDIDQDQHQILGQDSLHGISNLNNSSVEEVPQAHTILATSNANDDSGNIRCDEKKVARKEIERQRRQQMSTLHASLRNL LPPDSIKGRRSISDHMSEAVKCIKHLKSNIQDLSVKRDKLKNLSSSSTFEHGTEISDHNLLDSVTVRHYLDGLEIVLTRGPGEEGILLSRVLEAVLEEGF DVVGCTSTQKGQRHYTTIQCQASNLNCIDADRLKGKLIDVISLSRYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.015G134400 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Potri.019G093000 [exp]	1.41	0.9379
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G440200 [exp]	1.41	0.9411
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.016G105900 [exp]	2.44	0.8961
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145522 [exp]	5.19	0.9133
					Potri.012G120952 [exp]	7.74	0.9069
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G025100 [exp]	8.30	0.8678
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.007G119400 [exp]	11.18	0.8659
					Potri.019G108700 [exp]	13.67	0.8732
AT3G61930			unknown protein		Potri.002G179000 [exp]	14.45	0.8800
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G010850 [exp]	14.69	0.8534

Compare expression of checked genes

Potri.015G134400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.