Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 334 / 3e-113 Protein kinase superfamily protein (.1) AT3G15890 322 / 3e-108 Protein kinase superfamily protein (.1) AT3G24550 266 / 5e-83 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 259 / 3e-82 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT2G42960 255 / 1e-80 Protein kinase superfamily protein (.1) AT3G26940 253 / 1e-80 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT1G60800 258 / 4e-80 NIK3 NSP-interacting kinase 3 (.1) AT3G59110 254 / 6e-80 Protein kinase superfamily protein (.1) AT1G01540 251 / 3e-79 Protein kinase superfamily protein (.1.2) AT4G34440 256 / 4e-79 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132200 [exp] 625 / 0 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 446 / 1e-156 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 429 / 2e-150 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 418 / 5e-146 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 257 / 6e-83 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 259 / 3e-82 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.014G026100 [exp] 259 / 6e-82 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 262 / 1e-81 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 258 / 1e-80 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031673 [exp] 563 / 0 AT1G52540 338 / 1e-114 Protein kinase superfamily protein (.1) Lus10019988 [exp] 441 / 2e-154 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10006985 [exp] 433 / 9e-152 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10001323 [exp] 433 / 2e-151 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10011490 [exp] 420 / 5e-147 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10023130 [exp] 399 / 1e-138 AT1G52540 473 / 3e-168 Protein kinase superfamily protein (.1) Lus10035071 [exp] 268 / 4e-84 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10012664 [exp] 259 / 4e-84 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 264 / 1e-83 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024813 [exp] 263 / 3e-83 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.015G134500.1 pacid=42775766 polypeptide=Potri.015G134500.1.p locus=Potri.015G134500 ID=Potri.015G134500.1.v4.1 annot-version=v4.1 ATGTCTTCTCTTGCAAAAAAAATGATTTTGAAATGTTTTTGTTGTGTCGCCCGAAAAGAAGAACCAAATATCAGTGCACAGAATAATAGTAGGGAATATC CATGGGAAATCTACACCCTCAAGGAGATTCTTCATGCCACAAACAACTTTCATGATGATAATAAGATTGGAGAAGGTGGATTCGGAAGCGTTTACTGGGG TCGGACAAGTACTGGCATTGAGATAGCAGTTAAACGATTGAAGGCAATGAGCGCAAAGGCAGAGATGGAATTCGCGGTGGAAGTTGAGATACTTGGGAGG GTGAGGCATAAGAACTTGTTAGGTTTGAGGGGATTTTATGCAGGTGGAGATGAAAGGCTGATAGTCTATGATTACATGCCTAATCATAGCTTGATCGCCC ATCTACATGGCCAACTCGCTGTCGACTGCTTACTTGATTGGCACCGGAGAATGAACATTGTTATTGGATCAGCTGAGGGAATAGCGTACTTGCACCATGA GGCCAATCCTCATATAATACACAGGGACATAAAGGCAAGTAATGTTCTTTTAGATACAGAATTTCAAGCAAAAGTAGCAGATTTTGGTTTCGCAAAGTTG ATGCCAGAAGGGGTTACTCACATGACCACTAGGGTAAAGGGAACCCTAGGATACTTGGCTCCCGAATATGCGATGTGGGGGAAAGTTTCAGAGAGTTGTG ATGTTTATAGCTTCGGAATTTTACTCTTAGAGATCATCAGTGCGAAAAAACCATTAGAGAAGCTCCCTGGAGGGGTTAGGCGTGACATTGTTCAATGGGT CACCCCATATGTCCAAAAGGGTGCCTTTGATCATATTGCTGACCCCAGGTTGAAGGGAAGATATGATCGAGCACAACTTGAGACAGCAATCATGATCGCG ATGCGATGCACCGATAGCAACCCGGAGAATAGACCTAGCATGATGAAGGTGGTGGAATGGCTGAATGGTGGCCTAGGAAGGACAAAAGGGGTGTCGGTTG TGGAAGACATGGTTGATGAAGATGAAGAACAAGACTATAATGGTATGAAATATGATGATGACACCGATTATGATGGGTATGATGGAACGGAAAAAGTCAA AGAGAGAAGGACATGGCAGCATCGGAAATGA
AA sequence Show only first row Show all	>Potri.015G134500.1 pacid=42775766 polypeptide=Potri.015G134500.1.p locus=Potri.015G134500 ID=Potri.015G134500.1.v4.1 annot-version=v4.1 MSSLAKKMILKCFCCVARKEEPNISAQNNSREYPWEIYTLKEILHATNNFHDDNKIGEGGFGSVYWGRTSTGIEIAVKRLKAMSAKAEMEFAVEVEILGR VRHKNLLGLRGFYAGGDERLIVYDYMPNHSLIAHLHGQLAVDCLLDWHRRMNIVIGSAEGIAYLHHEANPHIIHRDIKASNVLLDTEFQAKVADFGFAKL MPEGVTHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPLEKLPGGVRRDIVQWVTPYVQKGAFDHIADPRLKGRYDRAQLETAIMIA MRCTDSNPENRPSMMKVVEWLNGGLGRTKGVSVVEDMVDEDEEQDYNGMKYDDDTDYDGYDGTEKVKERRTWQHRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52540			Protein kinase superfamily pro...		Potri.015G134500 [exp]	0	1
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.012G048900 [exp]	1.00	0.9817
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	3.87	0.9772
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071600 [exp]	4.00	0.9728
AT1G52540			Protein kinase superfamily pro...		Potri.012G132200 [exp]	5.91	0.9718
					Potri.001G019795 [exp]	6.32	0.9726
AT2G46495			RING/U-box superfamily protein...		Potri.014G098200 [exp]	6.70	0.9449
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.017G079500 [exp]	7.34	0.9721	Pt-WRKY72.1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.001G305400 [exp]	8.36	0.9696	1
					Potri.003G204450 [exp]	9.16	0.9679
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067700 [exp]	9.38	0.9706

Compare expression of checked genes

Potri.015G134500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.