Plant FIBer expression Database

Potri.015G134550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G134550.1 pacid=42776115 polypeptide=Potri.015G134550.1.p locus=Potri.015G134550 ID=Potri.015G134550.1.v4.1 annot-version=v4.1
ATGCTCAGATGGCCATACTTGTGTGGTTTGCGTTGTTTCACTGAGGGATTGCTTCCCGTTTTTGTTTGCTGGACTTTGATCTCTTCTCTGTTGGTACTCT
CTCCTGGGCCTTTGGCAGGTTCTTCTCATTGCCTTCTATTTCTTCCCTTCATTGTTGTTTCATCTTGTGCGTTGCTTTCTGCGTCAGATGCATTCTTGGC
ATGCTTCTTGCACGTTGTTGTTGTTGGCAGCCTGGTTTGGATAACATTTATCACAGTTGATTCATTGTAG
AA sequence
>Potri.015G134550.1 pacid=42776115 polypeptide=Potri.015G134550.1.p locus=Potri.015G134550 ID=Potri.015G134550.1.v4.1 annot-version=v4.1
MLRWPYLCGLRCFTEGLLPVFVCWTLISSLLVLSPGPLAGSSHCLLFLPFIVVSSCALLSASDAFLACFLHVVVVGSLVWITFITVDSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G134550
[exp]
0 1
AT5G06490 RING/U-box superfamily protein... Potri.010G243200
[exp]
7.41 0.9115
AT2G38310 RCAR10, PYL4 regulatory components of ABA r... Potri.008G073400
[exp]
10.09 0.9064
AT4G08250 GRAS GRAS family transcription fact... Potri.005G175300
[exp]
16.06 0.9091
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134300
[exp]
22.71 0.9029
AT1G52340 SIS4, SDR1, ISI... SHORT-CHAIN DEHYDROGENASE REDU... Potri.016G074000
[exp]
22.71 0.9054
AT5G46050 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE T... Potri.002G258700
[exp]
25.13 0.9020 PTR2.1
AT4G10780 LRR and NB-ARC domains-contain... Potri.001G405025
[exp]
27.65 0.8997
AT2G20030 RING/U-box superfamily protein... Potri.018G042501
[exp]
30.04 0.9021
AT3G47570 Leucine-rich repeat protein ki... Potri.011G102700
[exp]
30.65 0.8989
AT1G14920 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMON... Potri.016G027800
[exp]
34.64 0.9041

Potri.015G134550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.