Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GA20.2,GA20ox8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51810 525 / 0 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT4G25420 524 / 0 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 504 / 7e-180 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G60980 493 / 3e-175 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT1G44090 323 / 2e-108 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT5G05600 182 / 1e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 180 / 3e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 180 / 3e-53 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 179 / 1e-52 ATJRG21 jasmonate-regulated gene 21 (.1) AT3G19010 177 / 4e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132400 [exp] 746 / 0 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.002G151300 [exp] 568 / 0 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G073700 [exp] 535 / 0 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G103800 [exp] 418 / 1e-145 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 408 / 1e-141 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 401 / 3e-139 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 380 / 2e-131 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.012G006300 [exp] 199 / 8e-61 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 196 / 2e-59 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027399 [exp] 589 / 0 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 583 / 0 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10015016 [exp] 534 / 0 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 525 / 0 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10006350 [exp] 525 / 0 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10036539 [exp] 504 / 1e-179 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10041390 [exp] 500 / 5e-178 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10005037 [exp] 185 / 1e-54 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 184 / 1e-54 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 181 / 9e-54 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.015G134600.1 pacid=42776421 polypeptide=Potri.015G134600.1.p locus=Potri.015G134600 ID=Potri.015G134600.1.v4.1 annot-version=v4.1 ATGGCAATAGATTGCATCAAAACCATGCCATCCATAACCACCCCTCATCACCACCCAAAAGATCAGGATCAATGCAAAGATGATGGCAAGTCTTTTGTTT TTGATGCACAAGTTCTTCGACACCAGACAAACATACCCCAGCAGTTCATTTGGCCTGACCATGAAAAGCCTAATATTAATGCACCTGAACTCCAAGTCCC ACTTGTAGACTTGGGTGATTTCCTCTCTGGTAACCCTGTTGCTGCAGTGGAAGCTTCAAGACTTGTTGGTGAAGCATGTCAAAAACATGGTTTCTTTCTA GTTGTTAATCATGGAGTTGATAAAACGCTCATTGCCCATGCTCATAATTACATGGACACCTTCTTCGAATTGCCACTTTCTGAGAAACAAAAGGCCCAAA GAAAGATTGGCGAGTCTTGTGGATATGCTAGCAGCTTTACTGGCAGGTTTTCCTCTAAACTTCCATGGAAAGAAACGCTTTCTTTTCGCTACACAGCTGA GAAGAATTCATCAAAACACATCGAGGAATACTTTCATAACAGAATGGGGGAAGATTTCGCTGAATTCGGGAGTGTGTATCAGGACTACTGTGAGGCCATG AGCACTTTGTCACTAGGGATCATGGAGCTATTAGGCATGAGCCTTGGTGTGAGCAGAGAACATTTCAGGGAATTCTTTGATGAGAATGATTCAATAATGA GGCTCAACTACTACCCTCCATGCCAAAAACCTGACCTTACTTTAGGCACCGGTCCTCATTGTGATCCAACTTCTTTGACCATCCTTCATCAAGACCAAGT GGGTGGTCTTCAAGTGTTTGTGGACAACGAATGGCGTTCGATTAGCCCCAATTTTGACGCTTTTGTTGTTAACATTGGTGACACCTTCATGGCTCTATCG AATGGTATATACAAGAGCTGTTTGCACCGAGCAGTGGTGAACAGCCAAACACCAAGAAAATCCCTCGCTTTCTTTTTGTGTCCAAAGAATGACAAGATGG TAACTCCACCACATGAATTAGTGGACACATGCAATCCGAGAATATATCCAGATTTCACATGGCCTATGTTGCTCGAATTCACACAAAAGCATTACCGAGC TGACATGAAGACACTTGAGGTGTTCACAAACTGGCTTCATCAACAAAGTTTTAGCTGA
AA sequence Show only first row Show all	>Potri.015G134600.1 pacid=42776421 polypeptide=Potri.015G134600.1.p locus=Potri.015G134600 ID=Potri.015G134600.1.v4.1 annot-version=v4.1 MAIDCIKTMPSITTPHHHPKDQDQCKDDGKSFVFDAQVLRHQTNIPQQFIWPDHEKPNINAPELQVPLVDLGDFLSGNPVAAVEASRLVGEACQKHGFFL VVNHGVDKTLIAHAHNYMDTFFELPLSEKQKAQRKIGESCGYASSFTGRFSSKLPWKETLSFRYTAEKNSSKHIEEYFHNRMGEDFAEFGSVYQDYCEAM STLSLGIMELLGMSLGVSREHFREFFDENDSIMRLNYYPPCQKPDLTLGTGPHCDPTSLTILHQDQVGGLQVFVDNEWRSISPNFDAFVVNIGDTFMALS NGIYKSCLHRAVVNSQTPRKSLAFFLCPKNDKMVTPPHELVDTCNPRIYPDFTWPMLLEFTQKHYRADMKTLEVFTNWLHQQSFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.015G134600 [exp]	0	1	Pt-GA20.2,GA20ox8
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.004G207200 [exp]	4.79	0.9194
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Potri.008G057300 [exp]	7.00	0.8870
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.016G066100 [exp]	7.14	0.8974	Pt-SPP1.2
AT5G38260			Protein kinase superfamily pro...		Potri.007G125600 [exp]	7.61	0.9045
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.006G090600 [exp]	9.48	0.8633
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	10.00	0.8919
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G152300 [exp]	16.24	0.8909
AT3G13310			Chaperone DnaJ-domain superfam...		Potri.011G166500 [exp]	20.92	0.8199
AT5G01540		LECRKA4.1	lectin receptor kinase a4.1 (....		Potri.016G123501 [exp]	24.00	0.8818
AT5G58950			Protein kinase superfamily pro...		Potri.007G085300 [exp]	27.05	0.8264

Compare expression of checked genes

Potri.015G134600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.