Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51820 1033 / 0 STF1, PGM1, ATPGMP, PGM STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) AT1G70730 677 / 0 PGM2 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) AT1G23190 674 / 0 PGM3 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132500 [exp] 1120 / 0 AT5G51820 1029 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Potri.008G132500 [exp] 684 / 0 AT1G23190 987 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Potri.010G109500 [exp] 682 / 0 AT1G70730 1006 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031669 [exp] 1020 / 0 AT5G51820 1003 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Lus10027400 [exp] 991 / 0 AT5G51820 966 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Lus10001596 [exp] 701 / 0 AT1G23190 1024 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Lus10021777 [exp] 695 / 0 AT1G70730 1026 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Lus10003712 [exp] 694 / 0 AT1G23190 1017 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Lus10034595 [exp] 693 / 0 AT1G70730 1017 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00408 [poplar] [flax] PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain PF02878 [poplar] [flax] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [poplar] [flax] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 [poplar] [flax] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Potri.015G134700.1 pacid=42775226 polypeptide=Potri.015G134700.1.p locus=Potri.015G134700 ID=Potri.015G134700.1.v4.1 annot-version=v4.1 ATGGCTTCTTGTTGTTGTCTGAGGCTTGAAAATGTGATCTTTTCATCAACTTTTAGAAAACTGGGGCAAACTAGTGCAAATGGCAGTGTCCTCCTCTCTT CTCCTATCTCTTCTTTCTCTCTTTTATCATCATCTTCTGCTTTATTTTCTCCAATCTTAAAAACTTCACATTCGCTTAGCTCTTCTCTTTCTGTGAAAGC TTCCTCTTCTACTGCCATTGCTGAACCTGAAGGCATCAAGATTAATTCAGTGCCGACAAAGCCAATTGAGGGTCAGAAGACAGGGACAAGTGGTCTGCGA AAGAAGGTTAAGGTTTTCACTGAGGAAAACTACCTTGCAAATTGGATTCAGGCATTGTTTAATTCATTGCCACCAGAGGATTACAAGAATGGAGTGCTGG TCTTGGGAGGGGACGGTCGTTACTTCAATCGAGAAGCTTCACAGACAATCATCAAAATTGCTGCAGGGAATGGTGTTGGCAAAATCCTTGTCGGCAAGGA AGGTATTATGTCCACGCCAGCTGTTTCTGCCGTGATCCGAAAGAGGAAGGCCAACGGTGGATTTATAATGAGTGCAAGTCATAATCCTGGAGGGCCTGAA TATGATTGGGGTATCAAGTTTAATTACAGCAGTGGGCAACCTGCACCTGAATCCATCACTGACAAGATATATGGAAACACCCTTTCTATATCTGAGATTA AGATGGCGGACATTCCTGATGTCGACCTTTCTAGCCTCGGAGTCACAGAATATGGAAACTTCATTGTCGAAGTAGTAGACCCAGTTTCGGATTATTTGGA ACTAATGGAGAATGTATTTGATCTTGAGCTCATCAAAAGTCTCCTTTCACGGTCAGATTTCAGGTTTGTATTCGATGCCATGCATGCTGTTACTGGTGCT TACGCAAAACCCATCTTTGTGGACAAGCTTGGGGCCAGTCCGGATTCAATTTCAAATGGGGTACCTCTGGAGGATTTTGGTCACGGCCATCCAGATCCTA ATCTTACATATGCCAAGGATTTGGTCAACATCATGTATGGTGAGAATGGACCAGATTTTGGAGCTGCAAGTGATGGAGATGGGGACAGAAACATGATCCT AGGTAGAGGGTTTTTTGTCACTCCTTCAGATTCGGTTGCTATCATTGCTGCCAATGCACAGGAAGCCATTCCATACTTTATGAGTGGCCCTAAGGGTTTA GCTCGTTCCATGCCGACAAGTGGTGCTCTAGATCGTGTGGCTGAAAAATTGAATCTTCCATTTTTTGAGGTCCCTACTGGTTGGAAATTTTTTGGGAATC TTATGGATGCTGGAAAACTGTCAATTTGTGGTGAAGAAAGTTTTGGAACTGGTTCTGATCACATTCGTGAGAAGGATGGCATATGGGCTGTTTTAGCTTG GCTTTCAATTATTGCTTACAGAAACAAAGACAAGAAACCAGGGGAGAAGTTAGTATCTGTTGCTGATGTTGCGAAAGAGCATTGGGAAACCTTTGGAAGA AATTTCTTTTCTAGATATGACTATGAAGAATGTGAATCTGAAGGTGCCAACAAAATGATCCAGAATCTTAGAGATATAGTCTCTAAAAGCAAACCAGGTG ATAAGTATGGAAATTACACCCTTCAGTTTGCTGATGACTTTACGTACACTGATCCTGTGGATGGAAGTGTGGTATCAAAGCAAGGTGTCCGGTTTGTTTT CACCGATGGATCAAGGATTATATTCCGTTTATCTGGAACTGGATCAGCAGGTGCAACTGTCAGAATCTACATCGAACAGTATGAACCAGATGTCTCTAAA CATGAGATGGATGCCCAAGTAGCCCTAAAACCACTAATAGATCTGGCATTGTCTGTATCAAAGTTGAAAGACTTCACAGGAAGGGACAAGCCAACAGTCA TCACATGA
AA sequence Show only first row Show all	>Potri.015G134700.1 pacid=42775226 polypeptide=Potri.015G134700.1.p locus=Potri.015G134700 ID=Potri.015G134700.1.v4.1 annot-version=v4.1 MASCCCLRLENVIFSSTFRKLGQTSANGSVLLSSPISSFSLLSSSSALFSPILKTSHSLSSSLSVKASSSTAIAEPEGIKINSVPTKPIEGQKTGTSGLR KKVKVFTEENYLANWIQALFNSLPPEDYKNGVLVLGGDGRYFNREASQTIIKIAAGNGVGKILVGKEGIMSTPAVSAVIRKRKANGGFIMSASHNPGGPE YDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKMADIPDVDLSSLGVTEYGNFIVEVVDPVSDYLELMENVFDLELIKSLLSRSDFRFVFDAMHAVTGA YAKPIFVDKLGASPDSISNGVPLEDFGHGHPDPNLTYAKDLVNIMYGENGPDFGAASDGDGDRNMILGRGFFVTPSDSVAIIAANAQEAIPYFMSGPKGL ARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSVADVAKEHWETFGR NFFSRYDYEECESEGANKMIQNLRDIVSKSKPGDKYGNYTLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQYEPDVSK HEMDAQVALKPLIDLALSVSKLKDFTGRDKPTVIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Potri.015G134700 [exp]	0	1
AT5G66600			Protein of unknown function, D...		Potri.005G130000 [exp]	5.19	0.7793
AT5G39790			5'-AMP-activated protein kinas...		Potri.017G125400 [exp]	18.16	0.7509
AT5G45650			subtilase family protein (.1)		Potri.011G076700 [exp]	29.46	0.7431
AT5G42810		ATIPK1	inositol-pentakisphosphate 2-k...		Potri.002G032900 [exp]	30.33	0.7063
AT5G50330			Protein kinase superfamily pro...		Potri.015G091000 [exp]	38.15	0.7269
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.001G403900 [exp]	54.00	0.6795
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	66.94	0.7154
AT3G28760			unknown protein		Potri.017G080300 [exp]	70.58	0.6837
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G035900 [exp]	114.51	0.6660
AT5G14210			Leucine-rich repeat protein ki...		Potri.015G093100 [exp]	146.36	0.6791

Compare expression of checked genes

Potri.015G134700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.