Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 415 / 4e-145 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 376 / 2e-130 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 372 / 5e-129 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 370 / 3e-128 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 363 / 1e-125 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06020 363 / 2e-125 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 146 / 6e-43 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 152 / 6e-42 FLN1 fructokinase-like 1 (.1) AT1G69200 133 / 3e-34 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132700 [exp] 547 / 0 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 430 / 5e-151 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 404 / 9e-141 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 375 / 1e-129 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 374 / 1e-129 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 369 / 8e-128 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 149 / 5e-40 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 131 / 3e-34 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.014G074125 [exp] 80 / 2e-18 AT5G51830 80 / 7e-19 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027401 [exp] 476 / 2e-169 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 468 / 2e-166 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 406 / 2e-141 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 403 / 2e-140 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 369 / 2e-127 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 368 / 2e-127 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 360 / 3e-124 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 358 / 4e-123 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 352 / 8e-122 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 302 / 2e-102 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.015G134900.5 pacid=42775848 polypeptide=Potri.015G134900.5.p locus=Potri.015G134900 ID=Potri.015G134900.5.v4.1 annot-version=v4.1 ATGTGGATTGTTCTGATATCAAGCAATTGGAAATGTGTAGGTGATTCTAATGATCATGCATCGAATATGAAAGGAGCGAACGACTCGCTAGTTGTTTGTT TTGGGGAAATGTTGATTGACTTTGTATCGACAGTTGCTGGGGTTTCACTAGCTGAAGCACCTGCTTTCAAGAAGGCTCCTGGTGGTGCTCCTGCTAATGT GGCTGTTGGTATATCAAGACTAGATGGTTCATCAGCTTTTATGGGCAAGCTTGGTGATGATGAATTTGGGTATATGCTATCTGACATTTTGAAACAAAAC AACGTGGATAATTCCGGCGTGCGATTTGATTCTACTGCAAGGACTGCTCTGGCATTTGTTACGCTCAAAGATGATGGTGAACGTGAATTCTTGTTTTTCC GTCATCCAAGTGCAGACATGCTTCTTCGAGAATCAGAATTAGACATAAACCTCCTTGAGCAGGCCAGGATCTTTCATTATGGATCAATTAGTTTGATTTC AGAACCTTGCAGGTCAAGTCAATTTGCGGCAATGAGAATTGCCAAAAAGTCTGGCAGCATCCTTTCTTATGATCCAAATTTGAGATTGGCATTATGGCCA TCAGCAGAGGCTGCTCGGGAAGGCATAATGAGTATATGGGATCAAGCTGATGTTATTAAGATAAGTGAGGAAGAAATAACATTCTTAACTGGATGTGATG ATCCTAATGATGATAAAGTGGTCATGGACAAGCTTTTTCATCCCAATCTGAAGCTTTTGATTGTAACTGAAGGGTCAAAGGGTTGTCGATATTACACCAA GGAATTCAAAGGCTGGGTTCCTGGTGTTAAGGTGAAACCCGTTGACACAACTGGTGCCGGCGATGCTTTTGTTGGTGGGATGTTGAGCAACCTAGCTTCT AACCTAAATCTATTTGAGGATGAGAAGCTATTAAGAGAAGCTCTTCTATTTGCAAATGCCTGCGGTGCTGTGACAGTAACAGAGAGAGGTGCTATCCCTG CACTACCCACGAAAGATGCTGTCCTTAAACTCTTAGGGACTTTGTCCTTAAACTCTTAG
AA sequence Show only first row Show all	>Potri.015G134900.5 pacid=42775848 polypeptide=Potri.015G134900.5.p locus=Potri.015G134900 ID=Potri.015G134900.5.v4.1 annot-version=v4.1 MWIVLISSNWKCVGDSNDHASNMKGANDSLVVCFGEMLIDFVSTVAGVSLAEAPAFKKAPGGAPANVAVGISRLDGSSAFMGKLGDDEFGYMLSDILKQN NVDNSGVRFDSTARTALAFVTLKDDGEREFLFFRHPSADMLLRESELDINLLEQARIFHYGSISLISEPCRSSQFAAMRIAKKSGSILSYDPNLRLALWP SAEAAREGIMSIWDQADVIKISEEEITFLTGCDDPNDDKVVMDKLFHPNLKLLIVTEGSKGCRYYTKEFKGWVPGVKVKPVDTTGAGDAFVGGMLSNLAS NLNLFEDEKLLREALLFANACGAVTVTERGAIPALPTKDAVLKLLGTLSLNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51830			pfkB-like carbohydrate kinase ...		Potri.015G134900 [exp]	0	1
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.004G184500 [exp]	1.00	0.7558
AT1G18720			Protein of unknown function (D...		Potri.008G088800 [exp]	5.91	0.6958
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.001G371700 [exp]	6.63	0.7460	CBL2.2
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.006G194100 [exp]	9.74	0.7062	SINAT2.2
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Potri.007G126600 [exp]	13.41	0.6782
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Potri.016G118000 [exp]	14.42	0.6930
AT1G02816			Protein of unknown function, D...		Potri.013G014600 [exp]	16.73	0.6786
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G209400 [exp]	19.33	0.6896
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.012G104500 [exp]	21.44	0.6702	LJLCB2.2
AT3G22750			Protein kinase superfamily pro...		Potri.010G083500 [exp]	22.24	0.6925

Compare expression of checked genes

Potri.015G134900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.