Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62170 239 / 1e-68 unknown protein AT5G51850 131 / 8e-32 unknown protein AT4G25430 91 / 6e-19 unknown protein AT1G74160 48 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G132900 [exp] 956 / 0 AT5G62170 247 / 1e-71 unknown protein Potri.014G194600 [exp] 54 / 4e-07 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.002G253600 [exp] 47 / 5e-05 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.015G058900 [exp] 45 / 0.0002 AT1G74160 795 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031666 [exp] 231 / 3e-65 AT5G62170 213 / 3e-59 unknown protein Lus10027402 [exp] 143 / 1e-36 AT5G62170 161 / 3e-43 unknown protein Lus10027403 [exp] 72 / 2e-13 AT5G62170 84 / 4e-18 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378) PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.015G135200.1 pacid=42775868 polypeptide=Potri.015G135200.1.p locus=Potri.015G135200 ID=Potri.015G135200.1.v4.1 annot-version=v4.1 ATGGGAAAGGAATGGTATTACTGGGGTGGTGGAAAAACCTCCAAGAAAGGTGGTGGTGGTGGTGGTGAAGGTGGAAGAGAAGGAGAGAAAGATAGTGCTA ATTTACCTACTGGTTGCATGTGTGCTGTTTTCCAGTTGTTTGATTTCCATCATCAGTTTCAGTTTCCTTTAAACCATGAACAACAGTCTTCTAATTTACT TCAGCCCAACTCTTTCCTTCCTCTTGAGGATCCTCCTATACCTAAAGGTTTTGAAGCACCAAGGAATAGCTTGGAATTGGAAGAGGAGGAGCCTTCATTG CCATCATCAAAAGATGAAAATTTGTATATCCCTATGGGCATTCAAATCAGAACAAAAGGAGTTCCAAATGATTCATCTTCATCAGAAATCAGCTCTTCAC CGGGGACCAAGACACCAAATTTGGTAGCTAGACTTATGGGTCTTGATCTTCTTCCTGATCATCTTACCTACTCACCAAGCCACTCTTCTTCATCAACTCT TGGCACACCAAACCTTCCACCAAAATCCCATTTTCAGTACCACCATTGCAGACCTCAACAACCACCTCACCGTAGCAAAAGAAGTAGCCCCCGAAGTTGT ACTTTGGACCATGATTTTTCAGGCACTCGTTCTTTGCCTGAGACACCAAGAATATCATCAGCTAGAAGATCAGATGTAGAACACCGTTTGTCACTTCAAA TCAACAAAGAAAATGCAGGTGAAAACTTAGTTCTCCCTCGTTTCTCATCTTTGAAAAGAAAAGAGCTGAAAGTTGAAGATGAGAATAGAAGTCCAGGCCA CTTTGCAAGGCAAATTGTGAAGCAAGTTAAAGAAAGTGTAAGCAGGAAAGCTGGCTTGGATATTACAAACACAGTAATAAATAGAGAGCAAACAAGAAGA AGAGATCAAGAGCTTGAGCTTGTTAGCCAATACAAGTCCAAGAAAACTCTCTCCAAAGCTCCAAGTACCACCAAAACGGTTGGTGCTTCAGGTAATAGTT CAGGCAAGCATTCTGTGAACACAACTTCTATCTCACCAAGACTGAAATTCTTGGAACCCAAAAACAAGCCAATCACAACTCTACCTTGCAAGGACCACAA TAATATTTCTAATTCTCAAAAACCCCCATCACTTCTGTCACAAAGTACCAAACCTTCAACAAAGCCAGATTTGCCTAAGGTCCTGCAGGATCAACACCAG CACCAGCAGAGACCTTTCAAGAAGTGCAACAAAGTGACTGAAGAAAAATTTGGTCCACCACCACCAAGATTCGTCAAGAAACCTCTAAAAACATCACATA TTATCAGAACCAAGCAAGAAGAGCCATTTGTCAGTTCAACATCAGCTAGAGAAACCAATATTACTGACAAGAAATGCAAGAAAACCCCATTATCAAATGA CCTTAACATCTCTCTCCCAACTCTCCTTCCTGTCAAGAAAGACCCTACTCCTCCTGCTACAAAAATCCCTCAAAAACAGGTATCAAATGCTGCTCAAGAA TCGAAATGGTGCTCACAGTTATCTAGTTGTTCGAGCCAGTCGTACAAACAACCACAAGCGACGCGTAGGCTCGATGCCCGAGAAAATAACAATGATGATA GGTCTCATAACGGTGTCGCCACCAATATCATCACCACCGGAGATGGAGCCGCACAAGAAGAATATGAGTACATTAGTAGAATACTAAAACGTACTGGCAT AGACAAAGATACCCCAGTGTCTTTTACTAGGTGGTTTTCTCCGTCTCATCCTCTGGACCCTTCAACTTTTTACTACCTAGAACATTTTACCACACCAGCC TCTACTACCACCTGCCAAGCTCGTCAAGCCATGGACCGTCGATGCAATCGAAAATTATTGTTCAATCTTGTTGACGAAATTTTGGTCGACATCTTACGTC CATACATCAACGTGAAACCTTGGAGTAGTAGTACTAGATTTGGCTTATGTACTCGGAATTTTCTCCTTAGTCACATGAATGGGTCGCATTTGGTTCACAT GTTATGTACAAAGCTTAGGAGCTTCCCTTGCGCTGACTGTCATGACCTCGAAGACATTGATGGGTTAATAGACAAAGATCTGCCCCAGTTGATGAAGGAG CAAAGTGAGATTGCATTTGGAGAAGAAGGAGAAGGGATTGTGATGGAAATAGAGAATGAGATTGTGGAAACATTAATACATGAAACGGCTTGGATTTTTT ATAGACATTGA
AA sequence Show only first row Show all	>Potri.015G135200.1 pacid=42775868 polypeptide=Potri.015G135200.1.p locus=Potri.015G135200 ID=Potri.015G135200.1.v4.1 annot-version=v4.1 MGKEWYYWGGGKTSKKGGGGGGEGGREGEKDSANLPTGCMCAVFQLFDFHHQFQFPLNHEQQSSNLLQPNSFLPLEDPPIPKGFEAPRNSLELEEEEPSL PSSKDENLYIPMGIQIRTKGVPNDSSSSEISSSPGTKTPNLVARLMGLDLLPDHLTYSPSHSSSSTLGTPNLPPKSHFQYHHCRPQQPPHRSKRSSPRSC TLDHDFSGTRSLPETPRISSARRSDVEHRLSLQINKENAGENLVLPRFSSLKRKELKVEDENRSPGHFARQIVKQVKESVSRKAGLDITNTVINREQTRR RDQELELVSQYKSKKTLSKAPSTTKTVGASGNSSGKHSVNTTSISPRLKFLEPKNKPITTLPCKDHNNISNSQKPPSLLSQSTKPSTKPDLPKVLQDQHQ HQQRPFKKCNKVTEEKFGPPPPRFVKKPLKTSHIIRTKQEEPFVSSTSARETNITDKKCKKTPLSNDLNISLPTLLPVKKDPTPPATKIPQKQVSNAAQE SKWCSQLSSCSSQSYKQPQATRRLDARENNNDDRSHNGVATNIITTGDGAAQEEYEYISRILKRTGIDKDTPVSFTRWFSPSHPLDPSTFYYLEHFTTPA STTTCQARQAMDRRCNRKLLFNLVDEILVDILRPYINVKPWSSSTRFGLCTRNFLLSHMNGSHLVHMLCTKLRSFPCADCHDLEDIDGLIDKDLPQLMKE QSEIAFGEEGEGIVMEIENEIVETLIHETAWIFYRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62170			unknown protein		Potri.015G135200 [exp]	0	1
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	3.87	0.8584
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Potri.010G051100 [exp]	8.12	0.8077
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.006G230700 [exp]	11.40	0.8244
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	12.12	0.8219
AT2G23440			unknown protein		Potri.007G041400 [exp]	14.83	0.8088
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.001G325300 [exp]	15.16	0.8086
AT1G67590			Remorin family protein (.1.2)		Potri.010G056800 [exp]	16.24	0.7750
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	27.94	0.7734
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Potri.015G141200 [exp]	28.00	0.7699	Pt-EMS1.1
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Potri.009G107200 [exp]	43.26	0.7527

Compare expression of checked genes

Potri.015G135200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.