Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51880 322 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G133100 [exp] 328 / 2e-114 AT5G51880 211 / 7e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038893 [exp] 360 / 3e-127 AT5G51880 310 / 3e-107 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015015 [exp] 129 / 3e-38 AT5G51880 106 / 1e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015014 [exp] 98 / 4e-26 AT5G51880 99 / 3e-27 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF13640 [poplar] [flax] 2OG-FeII_Oxy_3 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.015G135300.1 pacid=42775332 polypeptide=Potri.015G135300.1.p locus=Potri.015G135300 ID=Potri.015G135300.1.v4.1 annot-version=v4.1 ATGGCTGAAGCAGAAAAAGCAGGCAGAATTGCGAAGAGGAGAAAGATGGGAGATAGAAAAGCAGCAGAAAAGTGGCCTCTCATTAAACCCAAAAAGAATC TCCAAATTACTCGTCTCAAAGACACCGATCTATTTACTGTGCAAGATTTCTTCTCTTCTGCTGAATCAAAGGCATTTGTTAAAGCTGCAGAATCTATTGG TTTTGCTCACCAAGGGAGTCTGGGTCCAACACATGGTGAAGCTTATAGAGACAATGATAGACTTTCTGTCAGTGATCCTGTTCTTGCAAATGCGGTATGG GAGTCAGGACTAAGCAAATTGTTTTCTGACATTAAAATTCGGGGGAAGGTTGCTGTCGGCTTGAATCCAAATATCAGATTCTACAGGTACAAGGCTGGTC AGCGCTTTGGACGACATATTGATGAAAGTGTTAATCTGGGTGATGGGAAGCGCACTCATTATACTCTTTTAATATATTTAAGTGGTGCAACTAAAGCCAA AACTAAAACTGATCTGAACAGCCAGAAGGATTCTTCCTCAGAGCCTCTAGTTGGAGGAGAGACTGTCTTCTATGGACCAAGGAATAGTGTCGTGGCAGAT GTCGCTCCTGTTGAAGGGATGGCTCTCCTACATATTCATGGGGACAAGTGTATGCTGCATGAAGCTCGGAACGTTACTAAGGGTGTGAAATACATTTTTC GTTCAGATGTATGTTTTGCTTGA
AA sequence Show only first row Show all	>Potri.015G135300.1 pacid=42775332 polypeptide=Potri.015G135300.1.p locus=Potri.015G135300 ID=Potri.015G135300.1.v4.1 annot-version=v4.1 MAEAEKAGRIAKRRKMGDRKAAEKWPLIKPKKNLQITRLKDTDLFTVQDFFSSAESKAFVKAAESIGFAHQGSLGPTHGEAYRDNDRLSVSDPVLANAVW ESGLSKLFSDIKIRGKVAVGLNPNIRFYRYKAGQRFGRHIDESVNLGDGKRTHYTLLIYLSGATKAKTKTDLNSQKDSSSEPLVGGETVFYGPRNSVVAD VAPVEGMALLHIHGDKCMLHEARNVTKGVKYIFRSDVCFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Potri.015G135300 [exp]	0	1
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Potri.007G071400 [exp]	2.44	0.8697
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.001G236900 [exp]	3.87	0.8341
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Potri.009G067500 [exp]	4.24	0.8749
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.008G060000 [exp]	5.65	0.8341	Pt-EIF3.1
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Potri.003G138300 [exp]	6.16	0.8313	SEH1.1
AT2G35010		ATO1	thioredoxin O1 (.1.2)		Potri.001G159000 [exp]	7.21	0.8511
AT5G59910		HTB4	Histone superfamily protein (....		Potri.008G030400 [exp]	8.83	0.8370
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.014G024950 [exp]	8.94	0.8442
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Potri.007G127500 [exp]	9.16	0.8346	FTA.1
AT5G20700			Protein of unknown function (D...		Potri.006G078300 [exp]	12.96	0.8230

Compare expression of checked genes

Potri.015G135300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.