Plant FIBer expression Database

Potri.015G135400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52100 490 / 8e-177 CRR1 chlororespiration reduction 1, Dihydrodipicolinate reductase, bacterial/plant (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005771
[exp]
528 / 0 AT5G52100 480 / 9e-173 chlororespiration reduction 1, Dihydrodipicolinate reductase, bacterial/plant (.1)
Lus10027421
[exp]
463 / 2e-166 AT5G52100 418 / 8e-149 chlororespiration reduction 1, Dihydrodipicolinate reductase, bacterial/plant (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01113 DapB_N Dihydrodipicolinate reductase, N-terminus
CL0139 GADPH_aa-bio_dh PF05173 DapB_C Dihydrodipicolinate reductase, C-terminus
Representative CDS sequence
>Potri.015G135400.2 pacid=42775680 polypeptide=Potri.015G135400.2.p locus=Potri.015G135400 ID=Potri.015G135400.2.v4.1 annot-version=v4.1
ATGGCAGCCCTAAGCTGCCATTTTCATTTCACAGTTCATAAAGTTTCTAAGAATGTGATAACCAGGCCGTTTATCTCCTGCTCAATGCAACCTTCTCAGA
GTAATATTAAGGTAGTTATCAATGGAGCAGCAAAGGAAATAGGAAGGGCAGCAGTAATTGCAGTAACTAAGGCAAGAGGAATGGAGGTGGCAGGTGCTGT
AGATTCCCATTTTGTTGGAGAAGATATTGGAAAGCTTTGTGACATGGAAGAGCCTCTTGAAATACCAATAATAAATGATCTTACTATGGTATTAGGTTCC
ATATCTCAGTCAAAAGAAACAGGAGTAGTAGTGGATTTTACTGATCCTTCCACAGTTTATGACAATGTGAAGCAGGCAACAGCATTTGGCATGAGAAGTG
TGGTGTATGTTCCTCGGATTAAACTCGACTCGGTTGGAGCATTATCTGCATTCTGTGACAAAGCCAGCATGGGTTGTCTGATTGCACCAACTCTGTCCAT
TGGTTCTATACTCCTTCAGCAAGCTGCCATTACAGCTTCCTTTCATTACAACAACGCAGAAATTGTTGAATCAAAAGCAAATCCAATAGATTTTCCGTCA
ATGGATGCTATTCAGATTTCAAAGAACCTCTCTAACCTGGGTCAGATTTACAACAGAGAAGATATATCTACTGATGTTGTGGCAAGAGGCCAAGTTATAG
GAGAGGATGGTGTTAGGGTACATAGCATGGTCCTACCAGGGCTTCCCTCTAGTACAACTGTTTACTTCTCTGGCCCAGGAGAGGTTTACTCTATCAAACA
TGATATCACTGATGTGCAATCCCTCATGCCTGGCCTGCTCTTGGCTATCAGAAAGGTCATCCGACTTAAGAATCTAGTGTATGGGTTGGAGAAATTTTTG
TGA
AA sequence
>Potri.015G135400.2 pacid=42775680 polypeptide=Potri.015G135400.2.p locus=Potri.015G135400 ID=Potri.015G135400.2.v4.1 annot-version=v4.1
MAALSCHFHFTVHKVSKNVITRPFISCSMQPSQSNIKVVINGAAKEIGRAAVIAVTKARGMEVAGAVDSHFVGEDIGKLCDMEEPLEIPIINDLTMVLGS
ISQSKETGVVVDFTDPSTVYDNVKQATAFGMRSVVYVPRIKLDSVGALSAFCDKASMGCLIAPTLSIGSILLQQAAITASFHYNNAEIVESKANPIDFPS
MDAIQISKNLSNLGQIYNREDISTDVVARGQVIGEDGVRVHSMVLPGLPSSTTVYFSGPGEVYSIKHDITDVQSLMPGLLLAIRKVIRLKNLVYGLEKFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52100 CRR1 chlororespiration reduction 1,... Potri.015G135400
[exp]
0 1
AT1G03600 PSB27 photosystem II family protein ... Potri.002G056300
[exp]
2.64 0.9704
AT2G01755 unknown protein Potri.008G135400
[exp]
3.00 0.9662
AT5G01920 STN8 State transition 8, Protein ki... Potri.016G138500
[exp]
7.48 0.9633
AT2G38140 PSRP4 plastid-specific ribosomal pro... Potri.016G113700
[exp]
10.24 0.9612 Pt-PSRP4.1
AT4G02530 chloroplast thylakoid lumen pr... Potri.006G067600
[exp]
13.63 0.9606
AT3G56650 Mog1/PsbP/DUF1795-like photosy... Potri.006G034300
[exp]
13.67 0.9547
AT4G17740 Peptidase S41 family protein (... Potri.008G173900
[exp]
15.09 0.9544
AT1G67280 Glyoxalase/Bleomycin resistanc... Potri.018G042100
[exp]
17.32 0.9538
AT2G28190 CZSOD2, CSD2 copper/zinc superoxide dismuta... Potri.009G163200
[exp]
17.94 0.9585
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Potri.010G150300
[exp]
19.20 0.9567

Potri.015G135400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.