Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23030 576 / 0 MATE efflux family protein (.1) AT5G52050 536 / 0 MATE efflux family protein (.1) AT4G29140 508 / 4e-176 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT1G58340 507 / 8e-176 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT5G19700 496 / 5e-172 MATE efflux family protein (.1) AT2G38510 431 / 1e-146 MATE efflux family protein (.1) AT1G71870 405 / 5e-136 MATE efflux family protein (.1) AT5G49130 382 / 4e-127 MATE efflux family protein (.1) AT4G22790 251 / 1e-76 MATE efflux family protein (.1) AT2G34360 234 / 2e-70 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G133500 [exp] 927 / 0 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 733 / 0 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 546 / 0 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.007G043100 [exp] 481 / 1e-165 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 442 / 3e-150 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 422 / 3e-143 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 414 / 1e-139 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 399 / 6e-134 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 288 / 8e-91 AT5G52450 644 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027417 [exp] 687 / 0 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10017836 [exp] 640 / 0 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 547 / 0 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10012944 [exp] 474 / 5e-163 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 455 / 2e-155 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025237 [exp] 410 / 2e-137 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 384 / 2e-129 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10009788 [exp] 379 / 2e-126 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10038987 [exp] 318 / 2e-102 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 261 / 1e-80 AT4G22790 549 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.015G135600.1 pacid=42776582 polypeptide=Potri.015G135600.1.p locus=Potri.015G135600 ID=Potri.015G135600.1.v4.1 annot-version=v4.1 ATGTGCCAGCTGAACTCGTCTCCTCTATCCTGCAAATGCAATCAGGACTTCCCTTTCCTTGTCTCCATCAAAGACCAAGAGCCCAACATGTTCACCCCAT TATTGATCCCTAAAAGCCCAACATGTAAACCACAAAAAGAACGACGACAAGAAACCCAGATACCAAACCAGACCGACCTCTCCCTTTTTCTCAGAGAAGC AATATCCATAGCCAATATAGCTTTCCCCATGATGCTAACCGGTCTTTTGCTCTATCCACGCTCAATGATCTCCATGCTCTTCCTCGGCCGCCTTGGCGAG CTAGCCTTAGCTGGTGGGTCTCTTGCTGTTGGGTTCGCTAATATAACTGGTTACTCTATCCTCTCTGGCCTGGCTGTGGGAATGGAACCGATTTGTGGTC AAGCTTTCGGGGCTCAAAAACACCACCTCCTAGGCCAAACTTTGCAGAGAACAATACTCTTGCTCATTGTTGCTTCACTGCCTATTTCTTTTCTTTGGCT AAACATGAAAAGCATCCTTCTTTTTTGTGGCCAAGATGAGTCAATAGCCACAGAAGCACAGTTATTTCTTATTTACTCTATTCCTGACCTTTTAGCTCAA TCTTTTTTGCATCCATTGAGAATCTATCTTAGGACTCAATCAATAACCTTACCTCTTACATTTTGCGCCACTCTAGCTATTATTCTACACATTCCTATCA ACTATTTTCTCGTTACACACCTCAATTTAGGGACTAAAGGTGTTGCTCTTAGTGGGGTGTGGACTAACTTCATTCTTGTAGGTTCTTTGATAATTTATAT CCTTGTTTCTGGTGTCCACAAGAAGACATGGGGAGGGTTTTCGGTGGAGTGTTTCAAAGAGTGGAAAACTCTCTTGAATTTGGCCATTCCAAGCTGCATC TCAGTGTGTCTTGAATGGTGGTGGTATGAGATCATGATCTTGCTATGTGGGCTATTAGTGAATCCAAAAGCAACTGTTGCTTCAATGGGCATTTTGATTC AAACCACTGCATTAATTTACATATTCCCTTCTTCTCTAAGTTTCAGTGTATCAACAAGGGTTGGTAATCAGCTAGGTGCTAACCAGCCCAAGAAAGCAAA GTTTGCAGCCATTGCAGGCCTTTCTTTCAGCTTCATTTTTGGGTTTTCAGCTCTAAGTTTTGCAGTTATGGTCAGGAAGGTGTGGGCTAGCATGTTCACC CAGGACAAAGAGATCATAGCCTTAACATCACTTGTTTTGCCAATAATAGGACTTTGTGAGCTAGGAAATTGCCCACAAACAACCGGCTGTGGAGTCTTAA GAGGGACAGCCAGACCAAAAGTTGGAGCAAACATCAACTTGGGATGTTTCTACCTTGTTGGCATGCCAGTGGCAGTATGGTTAGGATTCTTTACAAGGTT TGATTTTGAAGGGTTATGGTTAGGCCTCTTAGCTGCACAAGGGTCCTGTGCGGTGACCATGTTGTTTGTCTTGGGTAGGACTGATTGGGAACATGAAGCT CAAAGAGCTAAAGAGCTGACAAATGCTTTGGTTCTTGTTGCCAATGTTGATGACAGCCTAGAAGTTGAAGAAAAGAAGCCACCTAAAGCTGAAATCAAGG AGGATTCTTTACATTTATTTGGTGATCGTCAATTAGATAATCTTTATAAACCTTTACCTGTTTAA
AA sequence Show only first row Show all	>Potri.015G135600.1 pacid=42776582 polypeptide=Potri.015G135600.1.p locus=Potri.015G135600 ID=Potri.015G135600.1.v4.1 annot-version=v4.1 MCQLNSSPLSCKCNQDFPFLVSIKDQEPNMFTPLLIPKSPTCKPQKERRQETQIPNQTDLSLFLREAISIANIAFPMMLTGLLLYPRSMISMLFLGRLGE LALAGGSLAVGFANITGYSILSGLAVGMEPICGQAFGAQKHHLLGQTLQRTILLLIVASLPISFLWLNMKSILLFCGQDESIATEAQLFLIYSIPDLLAQ SFLHPLRIYLRTQSITLPLTFCATLAIILHIPINYFLVTHLNLGTKGVALSGVWTNFILVGSLIIYILVSGVHKKTWGGFSVECFKEWKTLLNLAIPSCI SVCLEWWWYEIMILLCGLLVNPKATVASMGILIQTTALIYIFPSSLSFSVSTRVGNQLGANQPKKAKFAAIAGLSFSFIFGFSALSFAVMVRKVWASMFT QDKEIIALTSLVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYLVGMPVAVWLGFFTRFDFEGLWLGLLAAQGSCAVTMLFVLGRTDWEHEA QRAKELTNALVLVANVDDSLEVEEKKPPKAEIKEDSLHLFGDRQLDNLYKPLPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23030			MATE efflux family protein (.1...		Potri.015G135600 [exp]	0	1
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.002G039200 [exp]	1.00	0.8723
AT5G27920			F-box family protein (.1)		Potri.005G022600 [exp]	2.64	0.7627
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Potri.001G179300 [exp]	9.00	0.7236
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Potri.002G203500 [exp]	11.09	0.8080
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241800 [exp]	14.28	0.8112
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.018G124501 [exp]	15.32	0.7940
					Potri.014G095450 [exp]	17.60	0.6505
					Potri.009G111938 [exp]	24.85	0.7870
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Potri.013G132300 [exp]	33.54	0.7455	Pt-RMA1.2
AT5G07610			F-box family protein (.1)		Potri.005G043500 [exp]	46.55	0.7525

Compare expression of checked genes

Potri.015G135600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.