Plant FIBer expression Database

Potri.015G136500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06010 70 / 1e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G134200
[exp]
77 / 3e-20 AT1G06010 63 / 9e-15 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026833
[exp]
81 / 2e-19 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence
>Potri.015G136500.1 pacid=42774791 polypeptide=Potri.015G136500.1.p locus=Potri.015G136500 ID=Potri.015G136500.1.v4.1 annot-version=v4.1
ATGCCGAGAGAGACGAGTCCAGGCTTGAAGATCCTCTGGTTATGGACCATCGGCACCGCCGGCATTTTGGTTACAAGTGTGGTAAGGACCAGGCTAAAAG
ACATGGAGCAGATGATGAACACTGACCACCAGCAGCAGCAGCAGGAAGAGCATCAAAGCAGTCTAAGTGATCCAGTCTTATTGGATTCTGACGAGGGAGT
CATTGAAGAAGTGAAATCGTAG
AA sequence
>Potri.015G136500.1 pacid=42774791 polypeptide=Potri.015G136500.1.p locus=Potri.015G136500 ID=Potri.015G136500.1.v4.1 annot-version=v4.1
MPRETSPGLKILWLWTIGTAGILVTSVVRTRLKDMEQMMNTDHQQQQQEEHQSSLSDPVLLDSDEGVIEEVKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06010 unknown protein Potri.015G136500
[exp]
0 1
AT2G20490 NOP10, EDA27 EMBRYO SAC DEVELOPMENT ARREST ... Potri.005G226300
[exp]
5.09 0.7619
AT1G71730 unknown protein Potri.002G063100
[exp]
14.42 0.7498
AT5G63460 SAP domain-containing protein ... Potri.012G096900
[exp]
15.09 0.6858
AT5G50810 TIM8 translocase inner membrane sub... Potri.012G103400
[exp]
25.45 0.7138
AT5G41685 Mitochondrial outer membrane t... Potri.006G077500
[exp]
28.26 0.6925 Pt-TOM7.2
AT1G18800 NRP2 NAP1-related protein 2 (.1) Potri.017G080700
[exp]
35.49 0.6967
AT1G10865 unknown protein Potri.010G248800
[exp]
47.28 0.6742
Potri.006G257800
[exp]
62.34 0.6968
AT4G24340 Phosphorylase superfamily prot... Potri.013G101000
[exp]
63.62 0.6754
AT3G49910 Translation protein SH3-like f... Potri.007G085200
[exp]
95.49 0.6482 Pt-RPL26.2

Potri.015G136500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.