Plant FIBer expression Database

Potri.015G136600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16560 479 / 6e-171 Per1-like family protein (.1.2.3.4)
AT5G62130 439 / 3e-155 Per1-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G134300
[exp]
626 / 0 AT1G16560 466 / 8e-166 Per1-like family protein (.1.2.3.4)
Potri.007G065800
[exp]
520 / 0 AT1G16560 538 / 0.0 Per1-like family protein (.1.2.3.4)
Potri.002G177300
[exp]
61 / 6e-12 AT1G16560 0 / 1 Per1-like family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015006
[exp]
488 / 2e-174 AT1G16560 419 / 2e-147 Per1-like family protein (.1.2.3.4)
Lus10038885
[exp]
484 / 5e-173 AT1G16560 417 / 2e-146 Per1-like family protein (.1.2.3.4)
Lus10031187
[exp]
464 / 4e-165 AT1G16560 495 / 2e-177 Per1-like family protein (.1.2.3.4)
Lus10031765
[exp]
469 / 7e-161 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4)
Lus10027411
[exp]
448 / 8e-159 AT1G16560 393 / 5e-137 Per1-like family protein (.1.2.3.4)
Lus10031658
[exp]
374 / 4e-129 AT5G62130 328 / 3e-111 Per1-like family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0192 GPCR_A PF04080 Per1 Per1-like family
Representative CDS sequence
>Potri.015G136600.1 pacid=42776324 polypeptide=Potri.015G136600.1.p locus=Potri.015G136600 ID=Potri.015G136600.1.v4.1 annot-version=v4.1
ATGGCTCGTTCGCCGTTTCATCGGATTCTGCTCTTTGCTTGGATAGTTGTCCTCTTAATGGATGGGGTTCACGCGAGTGATGGTGATGCTGATCCGATTT
ACAAAGCTTGTGTGGAGCAATGTGAGAAAACTGGGTGTGTGGGGGAAAAATGCTTCCAACACTGTAAATTCTCGTCTGATGGGAAGCCGGAGGGTGGGCC
ATGGTATCTACAAGAGCCACTCTATCTGCAGTGGAAACAATGGGATTGTCGTAGTGACTGTCGATACCACTGCATGCTCACCAGGGAGGAAGAAAGAGAG
AAACTTGGTGGGAAGCCTGTCAAGTATCATGGGAAATGGCTGTTTCGTCGTGCTTATGGTTTTCAGGAACCTGTTTCTGTTGCTCTCTCTGCACTCAATC
TCGCTATTCAGTTTCATGGTTGGGTATCCTTTTTCATCCTGATATACTACAAGTTGCCGCTGACTCCTAGTAAGAAGAATTACTATGAATATACTGGCTT
GTGGAACATCTATGGGATCCTATCTATGAACTCCTGGTTCTGGAGTGCTGTTTTCCACAGTCGAGATGTTGAGTTGACAGAGAAACTACATTTTTCGTCT
GCTGTGGCATTACTAGGGTTTTCCCTTATCCTAGCAATACTGCGAGCTTTCAGCGTGAGAAATGAGGCTTCCAGGGTCATGGTTTCTACTCCAGTGATTG
CATTTGTTACTACACATATCTTATATCTGAACTGCTACAACCTTGATTATGGTCTAAACATTAAAGTTTGTGTAACCATGGGCGTAGCCCAGCTTCTCAT
TTGGGCAGTGTGGGCTGGTGTCACTCACCACCCTTCCTGGTCTAAGTTGTGGGTGGCTGTTGTTGGAGGCGGACTTGCCATGCTCTTGGAAATATATGAC
TTCCCGCCTTACCACAGATTTGTGGATGCTCATGCTCTCTGGCATGCCACTACCATCCCACTTACATATCTTTGGTGGAGCTTTGCGAAGGATGATGCTG
AGTTTAGAACATCAAGTCTCCACAAGAAAGCAAAGTAG
AA sequence
>Potri.015G136600.1 pacid=42776324 polypeptide=Potri.015G136600.1.p locus=Potri.015G136600 ID=Potri.015G136600.1.v4.1 annot-version=v4.1
MARSPFHRILLFAWIVVLLMDGVHASDGDADPIYKACVEQCEKTGCVGEKCFQHCKFSSDGKPEGGPWYLQEPLYLQWKQWDCRSDCRYHCMLTREEERE
KLGGKPVKYHGKWLFRRAYGFQEPVSVALSALNLAIQFHGWVSFFILIYYKLPLTPSKKNYYEYTGLWNIYGILSMNSWFWSAVFHSRDVELTEKLHFSS
AVALLGFSLILAILRAFSVRNEASRVMVSTPVIAFVTTHILYLNCYNLDYGLNIKVCVTMGVAQLLIWAVWAGVTHHPSWSKLWVAVVGGGLAMLLEIYD
FPPYHRFVDAHALWHATTIPLTYLWWSFAKDDAEFRTSSLHKKAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16560 Per1-like family protein (.1.2... Potri.015G136600
[exp]
0 1
AT1G28310 DOF AtDof1. 4 Dof-type zinc finger DNA-bindi... Potri.004G046600
[exp]
2.44 0.8940
AT3G47500 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) Potri.008G087800
[exp]
2.82 0.8853
AT5G55340 MBOAT (membrane bound O-acyl t... Potri.008G145700
[exp]
3.00 0.8786
AT4G29040 RPT2A regulatory particle AAA-ATPase... Potri.014G194700
[exp]
4.47 0.8718
AT4G17870 RCAR11, PYR1 regulatory component of ABA re... Potri.001G142500
[exp]
5.47 0.8688
AT2G39760 ATBPM3 BTB/POZ/MATH-domains containin... Potri.010G199200
[exp]
5.47 0.8562
AT2G42040 unknown protein Potri.016G058100
[exp]
6.92 0.8414
Potri.005G137450
[exp]
9.79 0.8277
AT2G37260 WRKY DSL1, ATWRKY44,... TRANSPARENT TESTA GLABRA 2, DR... Potri.016G083600
[exp]
12.12 0.8542
AT1G68910 WIT2 WPP domain-interacting protein... Potri.010G135900
[exp]
12.36 0.8058

Potri.015G136600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.