Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NAP8.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25450 953 / 0 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) AT5G39040 263 / 5e-78 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT3G62150 239 / 2e-66 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT4G01830 234 / 6e-65 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT2G47000 234 / 1e-64 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT2G36910 233 / 2e-64 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT5G46540 232 / 3e-64 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT1G02520 231 / 5e-64 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G28345 229 / 3e-63 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT1G02530 228 / 1e-62 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059700 [exp] 283 / 1e-85 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059800 [exp] 279 / 4e-84 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 278 / 9e-84 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G097200 [exp] 261 / 2e-77 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.014G113000 [exp] 254 / 2e-71 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 245 / 1e-68 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.002G187400 [exp] 245 / 1e-68 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 239 / 1e-66 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.014G113500 [exp] 239 / 1e-66 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038886 [exp] 872 / 0 AT4G25450 879 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) Lus10015007 [exp] 848 / 0 AT4G25450 858 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) Lus10021145 [exp] 265 / 1e-78 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10007987 [exp] 264 / 2e-78 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10036616 [exp] 231 / 9e-69 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10009988 [exp] 240 / 1e-66 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10023929 [exp] 234 / 6e-65 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10035834 [exp] 231 / 9e-64 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10010067 [exp] 230 / 2e-63 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010068 [exp] 230 / 2e-63 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.015G136700.4 pacid=42775201 polypeptide=Potri.015G136700.4.p locus=Potri.015G136700 ID=Potri.015G136700.4.v4.1 annot-version=v4.1 ATGGCCTCTGCAGCTCCCCCTCTCCTCCTCCAAACACTCCCCACTCGCATCCTCGCCCCATCTCTCCACGCGCCATCCAAACTCAAATTCAAACTCCCTC CCTCCTATCCTCATCTCCACCAATCCCGGCCTTTCCCGCCATTACTAAAAAGGCACCGGACTGCAACGACAATCACTTCTGCTTACGTGACCGGACCAGC ATCCGACCCGATTGTGACTGAACCGGACCACAAACTCGACCCGACCGATAACGATTCGTCCGTAACGGAGAAGGTTCAGTCAACGGAACTGATAAGTTGG GGTCTTTTGTGGAGTCTGTTGGCTAAGCATAAAGTACGACTCGTCGTTTGTGCTTTCACTCTTGTTGGTTGCACCTCTTGTACTCTCTCCATGCCTATAT TTTCAGGGAGATTTTTTGAGGTGTTGATTGGTGCGAGACCGGAGCCTCTATGGAGGTTGCTTAGTAAGATGGGAGTGTTATACGCTTTGGAACCGATTTT TACAGTGATCTTTGTTGTAAACATGAATACAGTATGGGAGAAGGTTATGGCAACACTGAGAGCTCAGATTTTTAGAAGGGTCTTGATTCAGAAGGTGGAG TTTTTTGATAGATACAAGGTTGGTGAACTTAGTGCTCTTTTGATGTCAGATTTGGGTTCGTTTAAAGATATTGTGAGCGAGAACATTTCGAGGGATCGTG GATTTAGGGCATTTTCTGAGGTCACTGGAACCATATGCATACTGTTTGCTCTGGCCCCCCAACTAGCACCGATTCTGGGGGTTTTGATGTTTGCCGTGTC TATTTCAGTTGCTGTATACAAGCGATCAACTGTACCTGTTTTCAAAGCTCATGGAAAGGCCCAGGCATCCATATCTGATTGTGTGACAGAAACCTTTTCT GCTATCCGTACTGTGAGATCCTTTGGTGGTGAAAAGCGCCAAATGCTAAACTTTGGCAGCCAGGTTCTTGCTTATCAAAGAAGTGGTATAAAGCTCGGGG CTTTCAAATCTGTGAATGAATCATTGACAAGGGTTGCTGTATATATTTCGCTGCTGACTTTATACAGTCTTGGAGGAAGCAGAGTAAAGGCTGGTTTACT CTCTGTTGGCACTGTTGCTTCTTTCATCGGATACACTTTCACATTAACTTTTGCTGTTCAAGGGCTGGTCAATACATTTGGAGATCTTCGCGGAGCACTT GCTGCTATTGAGAGGATTAATTCTGTTTTATCTGGAGTAGAAATTGATGAAGCCCTTGCCTATGGTTTAGAAAGACAAATCCAGAAAAAAGAAGTACATG ATGAGAAAATTAGTTTGTTCTTAGTTAATGGTTACAGTGGACAGAATCAAATTTTTAATACACATTACATGTCAGCCCTAAAATCAGCCAACACCGTGTG TAGCTTTGCTGGGTCTGGTGATGTTTGTCTTGAAGATGTGCACTTCTCTTACCCTTTACGACCTGATGTGGAAATCTTGAATGGTCTTAATTTGACTCTG AAATGTGGAACTGTGACCGCTCTAGTGGGCTCAAGTGGTTCAGGCAAAAGTACCATAGTACAACTATTGGCACGCTTTTATGAGCCAACCAGAGGTCGGA TTACAGTTTCAGGAGAGGATGTCCGGACATTTGAAAAGACTGAATGGGTGGAGGCCGTCTCCATCGTGAATCAGGAACCTGTTCTTTTCTCGGTATCTGT TGGAGAAAATATCGCATATGGGCTTCCAGATGATAATGTATCGAAGGACGATATCATAAAGGCTGCCAAAGCTGCAAATGCTCATGAATTTATAATATCA CTTCCACAGGGTTATGACACTCTAGTTGGTGAGCGTGGAGGCTTACTGAGTGGAGGACAGAGGCAGAGAATTGCTATTGCAAGAGCTCTGCTCAAGAATG CACCAATATTAATACTTGATGAGGCCACTAGTGCACTTGATGCAGTTAGTGAACGTCTTGTCCAGGATGCTCTGGACCAACTAATGAAGGGCAGAACAAC ATTGGTGATTGCTCATAGGTTAAGCACAGTTCAGAATGCTAATCAGATTGCGCTTTGTTCTGGTGGGAGGATTGCAGAACTAGGGACCCACTCTGAGTTG CTAGATAAGAAGGGTCAATATGCTTCATTAGTTGGCACTCAAAGACTGGCATTTGAGTGA
AA sequence Show only first row Show all	>Potri.015G136700.4 pacid=42775201 polypeptide=Potri.015G136700.4.p locus=Potri.015G136700 ID=Potri.015G136700.4.v4.1 annot-version=v4.1 MASAAPPLLLQTLPTRILAPSLHAPSKLKFKLPPSYPHLHQSRPFPPLLKRHRTATTITSAYVTGPASDPIVTEPDHKLDPTDNDSSVTEKVQSTELISW GLLWSLLAKHKVRLVVCAFTLVGCTSCTLSMPIFSGRFFEVLIGARPEPLWRLLSKMGVLYALEPIFTVIFVVNMNTVWEKVMATLRAQIFRRVLIQKVE FFDRYKVGELSALLMSDLGSFKDIVSENISRDRGFRAFSEVTGTICILFALAPQLAPILGVLMFAVSISVAVYKRSTVPVFKAHGKAQASISDCVTETFS AIRTVRSFGGEKRQMLNFGSQVLAYQRSGIKLGAFKSVNESLTRVAVYISLLTLYSLGGSRVKAGLLSVGTVASFIGYTFTLTFAVQGLVNTFGDLRGAL AAIERINSVLSGVEIDEALAYGLERQIQKKEVHDEKISLFLVNGYSGQNQIFNTHYMSALKSANTVCSFAGSGDVCLEDVHFSYPLRPDVEILNGLNLTL KCGTVTALVGSSGSGKSTIVQLLARFYEPTRGRITVSGEDVRTFEKTEWVEAVSIVNQEPVLFSVSVGENIAYGLPDDNVSKDDIIKAAKAANAHEFIIS LPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALDQLMKGRTTLVIAHRLSTVQNANQIALCSGGRIAELGTHSEL LDKKGQYASLVGTQRLAFE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	0	1	Pt-NAP8.1
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.001G256100 [exp]	1.41	0.9505
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	3.87	0.9554	Pt-CLPC.2
AT1G62960		ACS10	ACC synthase 10 (.1)		Potri.003G117700 [exp]	4.89	0.9359	Pt-ACS10.1
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.015G012900 [exp]	5.47	0.9415
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.010G092900 [exp]	5.91	0.9358
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.002G078700 [exp]	6.24	0.9502	NADK2.2
AT1G06540			unknown protein		Potri.005G201300 [exp]	6.32	0.9315
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.010G210900 [exp]	6.48	0.9100
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Potri.009G054600 [exp]	7.74	0.9178
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.010G189900 [exp]	8.00	0.9470

Compare expression of checked genes

Potri.015G136700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.