Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12580 587 / 0 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT5G19360 298 / 7e-95 CPK34 calcium-dependent protein kinase 34 (.1) AT2G17290 298 / 1e-94 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT5G12180 297 / 2e-94 CPK17 calcium-dependent protein kinase 17 (.1) AT1G74740 294 / 4e-93 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT4G38230 291 / 1e-92 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT5G04870 293 / 4e-92 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT1G18890 291 / 4e-92 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT3G10660 294 / 6e-92 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT4G35310 291 / 1e-91 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134600 [exp] 936 / 0 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.003G120800 [exp] 621 / 0 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.008G014700 [exp] 308 / 3e-98 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 305 / 1e-96 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.004G207300 [exp] 302 / 4e-96 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.013G112500 [exp] 301 / 7e-96 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.019G083200 [exp] 300 / 9e-96 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.009G168600 [exp] 298 / 1e-94 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.016G066700 [exp] 299 / 3e-94 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038889 [exp] 667 / 0 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10015009 [exp] 657 / 0 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10033108 [exp] 298 / 2e-96 AT5G12480 598 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Lus10001384 [exp] 302 / 9e-96 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10000889 [exp] 300 / 2e-95 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10036050 [exp] 300 / 3e-95 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1) Lus10017537 [exp] 296 / 5e-95 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10008958 [exp] 296 / 3e-94 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10021248 [exp] 300 / 5e-94 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10026559 [exp] 297 / 5e-94 AT2G17290 952 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.015G136900.2 pacid=42774904 polypeptide=Potri.015G136900.2.p locus=Potri.015G136900 ID=Potri.015G136900.2.v4.1 annot-version=v4.1 ATGGCTGTTGCCAAGAGCAACAGCAGCCGTGAATCCTTGAAGCAACCCTGCAACTGCTATAGAGTTTCAAGCTTGACTGAAACCATTCTGGACACGCACC AGATCTCTAATTTGAAAGATAGGTATGTTCTTGGAGAGCAATTAGGTTGGGGACAGTTTGGTGTTATTAGAGTGTGTACTGATAAGTTGTCCAGAGAGGT TCTGGCTTGCAAATCGATTTCCAAGGATAGACTGGTGACATTAGATGATGCAAGGAGTGTCAAGCTTGAGATTGAAATAATGACCAGGTTATCTGGGCAT GCTAATGTTGTGGATCTCAAGGCAGTTTATGAGGATGAGGATTATGTTCACCTGGTAATGGAACTTTGTGCTGGAGGGGAGCTTTTTCACCAGTTAGAAA AGCATGGACGCTTCTCCGAGGCTGAGGCTAGGGTTCTCTTCAGGCATCTTATGCAAGTGGTCCTTTATTGTCATGAAAATGGAGTGGTTCACAGAGATTT GAAGCCGGAGAATATCCTCTTAGCTACAAAATCCTCATCATCACCAATTAAATTGGCAGATTTTGGTCTTGCAACCTATGTCAAGCCGGGTCAGAGTTTG CATGGGACTGTTGGAAGCCCATTTTATATAGCTCCAGAGGTATTGGCAGGAGGCTATAACCAGGCTGCTGATGTTTGGAGTGCAGGGGTGATTCTCTATA TTCTTCTTAGTGGGATGCCACCATTTTGGGGTAAGACCAAGTCAAGGATATTTGATGCTGTGAGGGCAGCTGATCTGCGGTTTCCTTCTGATCCTTGGGA TCACATAACTGAATCTGCGAAGGAGTTAGTCAGGGGTATGCTTTGCACAGATCCCTCGCAAAGGTTTACTTCTCAGCAGGTTTTAGATAATTCCTGGATG AAGCATGATGGACCATATCCTGAAGAATCTAGTCAACGTGAAAAGCAAATTTGTGAAGAATGGGATTTAGGCGGCAGCTCACTCTCCATATTAATGGCCA GGGATCAAGACGTCAGCTTTGGCACTGGATCACCTATCATTAATGATGTTCAGTCTCCTACTTTCACTTGCAGATCATCATTCTCTTCTTTCCTAGGGGA GCCATCAACACCTAGCTTTGTATCTGGTGGATTCTCTTTTCGCAGCAGTGATGATTCAAATGCCTTGGAATTCATATCCCCTGTATCCTCAATGCCGAGC TTTGCATTCTCCAGCCCTGGTCCTGTAATTGAGCAAGGGAGTTCTACATTAGAATTCTCAAGCAACATTTCTAGGATAGATTCAGTTTGTGGAGGTCATC AACTGTCAGAGGGAAGCTTGGATAAGATGGTTCTGTTGCCGGAGTCTTCTCTATGCTGTGGACGTGAAGCCAGAGAAATGGAAAACAAGCCAGTTGAAGT TAAGAGAGCAGGAGCAGCAATAGGGTCCAGGGTGTTGGGCATACACAGTAAGAGGAACCGCACTATTGGTCTCGGTGAGCATGAGCAACTTGATCTCATG GTGACTGAATCAGTCATCCGCTGGGCATCCTGCACTCACCTTCCAACAGCACCATCTCTAAGGTCTTCTCTTGTCTGTTGA
AA sequence Show only first row Show all	>Potri.015G136900.2 pacid=42774904 polypeptide=Potri.015G136900.2.p locus=Potri.015G136900 ID=Potri.015G136900.2.v4.1 annot-version=v4.1 MAVAKSNSSRESLKQPCNCYRVSSLTETILDTHQISNLKDRYVLGEQLGWGQFGVIRVCTDKLSREVLACKSISKDRLVTLDDARSVKLEIEIMTRLSGH ANVVDLKAVYEDEDYVHLVMELCAGGELFHQLEKHGRFSEAEARVLFRHLMQVVLYCHENGVVHRDLKPENILLATKSSSSPIKLADFGLATYVKPGQSL HGTVGSPFYIAPEVLAGGYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFDAVRAADLRFPSDPWDHITESAKELVRGMLCTDPSQRFTSQQVLDNSWM KHDGPYPEESSQREKQICEEWDLGGSSLSILMARDQDVSFGTGSPIINDVQSPTFTCRSSFSSFLGEPSTPSFVSGGFSFRSSDDSNALEFISPVSSMPS FAFSSPGPVIEQGSSTLEFSSNISRIDSVCGGHQLSEGSLDKMVLLPESSLCCGREAREMENKPVEVKRAGAAIGSRVLGIHSKRNRTIGLGEHEQLDLM VTESVIRWASCTHLPTAPSLRSSLVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.015G136900 [exp]	0	1
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.015G118300 [exp]	1.41	0.8475
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.006G117300 [exp]	4.47	0.8415
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.012G134600 [exp]	6.70	0.8344	Pt-CDPK5.3
AT3G25150			Nuclear transport factor 2 (NT...		Potri.002G246600 [exp]	8.48	0.8356
AT5G25070			unknown protein		Potri.002G000800 [exp]	9.48	0.8407
AT3G25910			Protein of unknown function (D...		Potri.018G070500 [exp]	16.12	0.7730
AT1G17100			SOUL heme-binding family prote...		Potri.015G080000 [exp]	16.97	0.7981
AT1G68490			unknown protein		Potri.015G047100 [exp]	16.97	0.7441
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.017G106700 [exp]	19.97	0.8096
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.011G138400 [exp]	21.63	0.8074

Compare expression of checked genes

Potri.015G136900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.