Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25440 588 / 0 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 575 / 0 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G40880 345 / 1e-114 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT5G49200 341 / 6e-114 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT3G49660 76 / 5e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 72 / 2e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 68 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 66 / 9e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G21651 67 / 2e-11 zinc ion binding (.1) AT1G21650 65 / 7e-11 SECA2 Preprotein translocase SecA family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134800 [exp] 728 / 0 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 380 / 2e-127 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G239600 [exp] 72 / 3e-13 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 69 / 8e-13 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 69 / 1e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 67 / 1e-11 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 66 / 1e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 65 / 5e-11 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 64 / 1e-10 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038890 [exp] 564 / 0 AT5G51980 551 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032066 [exp] 338 / 2e-112 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10021656 [exp] 328 / 7e-108 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10033255 [exp] 297 / 1e-95 AT5G51980 285 / 3e-91 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021648 [exp] 292 / 3e-94 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1) Lus10014595 [exp] 274 / 4e-84 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032062 [exp] 216 / 4e-66 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10034716 [exp] 202 / 6e-61 AT5G51980 217 / 5e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001652 [exp] 194 / 8e-60 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021640 [exp] 168 / 1e-49 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.015G137200.1 pacid=42774971 polypeptide=Potri.015G137200.1.p locus=Potri.015G137200 ID=Potri.015G137200.1.v4.1 annot-version=v4.1 ATGGATTTTGACTATAACGGAGGCAACACCACCAACACAAACAAGCGGGTTTTTAACCGATTAGGAGGGGGCCAATCGGCGAACGACACGTCAAATCATA ATCACCTTCAGCAGAATCAGAAGGTCTGTTACCATTGGAGAGCTGGGAGGTGCAATCGATTTCCATGTCCGTTTCTCCACCGTGAACTCTCAGCACCGCC GACGCATGCGGCAGTGAATGGCGGAGTAGGAGCGAAAAGAGGGTTTGTGGGGAATGATTCGTCGTCGTCGTCGTTTTCGGGGAGGAGGGGTAATAATGGT ACTAATGGTAATAATAGTAATTATAGTAATAGTTGGGGGCGGTTTGGGAATAAGGGTGATGGGAGAGGGGTAAGAGGGGGTAGTGTGGAGAAAGTGTGTA CTTACTGGGTACAAGGGCATTGTAATCGTGGTGATACGTGTAGGTTTTTGCATTCTTGGAGTTTAGGTGATGGGTTTTCTTTGTTGACTCAACTTGAAGG GCATCAAAAGGTGATTAGTGGGATTGCATTGCCATCTGGGTCTGATAAGCTTTATACAGGGAGTAAAGATGAAACTGTTAGAGTTTGGGATTGCCAGTCT GGACAGTGTATGGGTGTGATAAATCTTGGTGGTGAGGTTGGTTGCATGATCAGTGAAGGTCCTTGGATTTTTGTTGGTACTCCAAATGTGGTCAAGGCAT GGAATACACAGACTAACACAGACCTGAGTCTTACTGGACCTGTGGGACAAGTGTATACTTTGGTCGTGGGTAACGATTTGCTATTTGCTGGTACACAGGA TGGGTCAATATTGGTATGGAAATTCAATGCAGCTACTTACAACTTCGAACCAGCTGCATCACTAAATGATCACAAAATGGCAGTTGTTTCATTAGTTGTT GGAGCTAATAGACTCTACTCTGGTTCTATGGATCATTCTATAAAAGTCTGGAGCCTTGAAACTTTGCAGTGTGTACAAACGCTGAAGGATCATACTTCAG TTGTCATGTCACTACTATGCTGGGAGCAGTTTCTTTTATCATGTTCGTTGGACCAAACAATAAAGGTGTGGGCTGCTACAGAAAGTGGAAACTTAGAAGT AACATACACTCACAAAGAAGAACATGGCCTGCTTACCCTTTGTGGGATGCATGATCTGGAAGGCAAGCCAATCTTGTTATGCTCTAGCAATGACTCTTCA GTCCACCTCTTTGATTTGCCATCGTTTTCAGAAAAGGGCAAAATTTTTGCCAAACAAGAGATCCGTGCCATTCAAACAGGTCCCGGGGGCCTATTTTTCA CTGGCGATGGCACTGGTCAAGTGAGAGTGTGGAATTCTGTTGCTGTACCAACTGCCACAACTTGA
AA sequence Show only first row Show all	>Potri.015G137200.1 pacid=42774971 polypeptide=Potri.015G137200.1.p locus=Potri.015G137200 ID=Potri.015G137200.1.v4.1 annot-version=v4.1 MDFDYNGGNTTNTNKRVFNRLGGGQSANDTSNHNHLQQNQKVCYHWRAGRCNRFPCPFLHRELSAPPTHAAVNGGVGAKRGFVGNDSSSSSFSGRRGNNG TNGNNSNYSNSWGRFGNKGDGRGVRGGSVEKVCTYWVQGHCNRGDTCRFLHSWSLGDGFSLLTQLEGHQKVISGIALPSGSDKLYTGSKDETVRVWDCQS GQCMGVINLGGEVGCMISEGPWIFVGTPNVVKAWNTQTNTDLSLTGPVGQVYTLVVGNDLLFAGTQDGSILVWKFNAATYNFEPAASLNDHKMAVVSLVV GANRLYSGSMDHSIKVWSLETLQCVQTLKDHTSVVMSLLCWEQFLLSCSLDQTIKVWAATESGNLEVTYTHKEEHGLLTLCGMHDLEGKPILLCSSNDSS VHLFDLPSFSEKGKIFAKQEIRAIQTGPGGLFFTGDGTGQVRVWNSVAVPTATT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Potri.015G137200 [exp]	0	1
AT3G57340			Heat shock protein DnaJ, N-ter...		Potri.006G153700 [exp]	3.87	0.7226
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Potri.012G134800 [exp]	16.00	0.6989
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	19.59	0.7147	MBD905,Pt-MBD5.1
					Potri.012G019350 [exp]	23.36	0.7154
AT1G21840		UREF	urease accessory protein F (.1...		Potri.001G224400 [exp]	24.33	0.6484
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.015G060800 [exp]	28.61	0.5805
AT3G21865		PEX22	peroxin 22 (.1)		Potri.017G038800 [exp]	29.74	0.6936
AT2G36300			Integral membrane Yip1 family ...		Potri.009G152600 [exp]	36.05	0.6425
					Potri.008G141600 [exp]	37.46	0.6275
AT3G14080			Small nuclear ribonucleoprotei...		Potri.001G166600 [exp]	37.66	0.6645

Compare expression of checked genes

Potri.015G137200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.