Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25433 113 / 1e-33 peptidoglycan-binding LysM domain-containing protein (.1) AT5G62150 111 / 4e-33 peptidoglycan-binding LysM domain-containing protein (.1) AT3G52790 101 / 3e-29 peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G135100 [exp] 160 / 3e-52 AT4G25433 108 / 5e-32 peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G077900 [exp] 151 / 9e-49 AT4G25433 108 / 7e-32 peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G152600 [exp] 134 / 7e-42 AT5G62150 100 / 1e-28 peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G030200 [exp] 103 / 4e-30 AT3G52790 114 / 1e-34 peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G231000 [exp] 102 / 2e-29 AT3G52790 119 / 3e-36 peptidoglycan-binding LysM domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031662 [exp] 133 / 2e-41 AT3G52790 112 / 4e-33 peptidoglycan-binding LysM domain-containing protein (.1) Lus10027407 [exp] 131 / 1e-40 AT3G52790 115 / 2e-34 peptidoglycan-binding LysM domain-containing protein (.1) Lus10015011 [exp] 106 / 4e-31 AT5G62150 107 / 5e-32 peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.015G137500.2 pacid=42775675 polypeptide=Potri.015G137500.2.p locus=Potri.015G137500 ID=Potri.015G137500.2.v4.1 annot-version=v4.1 ATGTACATGGATTTCTCTTCTTCAAAGAAAACCATGAAAATTTCAGTAGTAATAGCTGATGTAGCATCATGGAACTGTGCCATAGTCCTCTTATGCCTGA TATTATTGGGGTCTATTAGAGAGTATTCCGTCCCAAAAGATCAGCCTGTCAAGGGAAGCCAGCTTTTTGATAGACCTTGTGATGAAATATATGTTGTCGG AGAAGGAGAGACCCTCCACACCATCAGTGACAAGTGCGGCGACCCGTTTATAGTGGAGCAGAACCCACATATCCATGACCCGGATGACGTTTTCCCTGGA CTTGTCATCAAGATCACTCCTTCAAGGCCAAGGAAGTTGCTGAGGTAG
AA sequence Show only first row Show all	>Potri.015G137500.2 pacid=42775675 polypeptide=Potri.015G137500.2.p locus=Potri.015G137500 ID=Potri.015G137500.2.v4.1 annot-version=v4.1 MYMDFSSSKKTMKISVVIADVASWNCAIVLLCLILLGSIREYSVPKDQPVKGSQLFDRPCDEIYVVGEGETLHTISDKCGDPFIVEQNPHIHDPDDVFPG LVIKITPSRPRKLLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25433			peptidoglycan-binding LysM dom...		Potri.015G137500 [exp]	0	1
AT5G50930			Histone superfamily protein (....		Potri.015G105900 [exp]	9.79	0.6608
AT4G03415			Protein phosphatase 2C family ...		Potri.013G144100 [exp]	13.67	0.6265
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.016G111900 [exp]	15.06	0.6735
AT1G19025			DNA repair metallo-beta-lactam...		Potri.007G106700 [exp]	15.23	0.6346
AT3G13330		PA200	proteasome activating protein ...		Potri.001G470600 [exp]	15.65	0.6477
					Potri.006G189401 [exp]	23.23	0.6207
AT5G22820			ARM repeat superfamily protein...		Potri.009G151100 [exp]	25.76	0.6594
AT1G05630		AT5PTASE13, 5PT...	Endonuclease/exonuclease/phosp...		Potri.017G006900 [exp]	36.05	0.6302
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023600 [exp]	45.95	0.5947
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023550 [exp]	49.06	0.5927

Compare expression of checked genes

Potri.015G137500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.