Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51920 464 / 2e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 415 / 4e-138 unknown protein AT5G66950 303 / 5e-92 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 296 / 3e-89 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 294 / 2e-88 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G16540 77 / 2e-14 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111600 [exp] 700 / 0 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 672 / 0 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 318 / 4e-97 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G036100 [exp] 316 / 3e-96 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 94 / 2e-20 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G172100 [exp] 93 / 3e-20 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 93 / 3e-20 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G066400 [exp] 76 / 6e-14 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.001G056400 [exp] 58 / 1e-09 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015013 [exp] 761 / 0 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 760 / 0 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 351 / 6e-112 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 312 / 4e-95 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 311 / 3e-94 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 311 / 3e-94 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 310 / 5e-94 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 283 / 6e-86 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015781 [exp] 92 / 2e-19 AT1G27385 168 / 1e-49 unknown protein Lus10022447 [exp] 90 / 3e-19 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00266 [poplar] [flax] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Potri.015G137900.3 pacid=42775146 polypeptide=Potri.015G137900.3.p locus=Potri.015G137900 ID=Potri.015G137900.3.v4.1 annot-version=v4.1 ATGCAGCCTCGTTGCTTAAAAGAAGTCTCTCAAGCATGCCTTAGTGGCTGCTGTCCAAGCCCCATCCTTGGCTTTTCTGAGCCTCTTAACAAAATCAGCA AGCCTAGAAGCACATCAGCAACGTGTCGCCAGAACTTTGCTAAGACGACGACTTCCTCTATCTTCCCAAACACTCATTTCACAAATCCCGAGTCTCTCCC TTCTTTGCAAGAATCATTCAATGGATTCATCGAGGTGTATCCACAGTACTCAGATACATATCAAGTTGATCAAACAAGAGCCCAAGAATACAATCATCTT GCACTCTCCAACCACACCTGCCTTGATTATATCGGCATAGGCCTGTTCTCCTATGCCCAGCTGCAAAAACTTGACTCGGAAAAACAAATTCTCCCTTCCG CTTCTTCTCCTCCTCAAAACATGCATATTCCCTTCTTCAGTGTGTCCTACAAGACAGGGAATTTAAAGACACAGCTACTTCATGGTGGCCAAGAATCAGC TTTAGAATCTGCAATGAAGAAAAGAATCATGAGTTTTCTTAATATATCTGAAAATGATTACTCTATGGTTTTCACCGCAAACAGAACATCAGCTTTCAAA CTTCTAGCAGAGTCTTACCCGTTCAAGACTAGCCGGAAGCTTCTGACTGTGTACGACTATGAGAGTGAGGCAGTGGAAGCAATGATTAATAGCTCTGATA AGAAAGGAGCCCAGGTCATGTCAGCAGAGTTCTCGTGGCCTAGGTTAAGGATTCAATCAGCAAAATTGAGGAAAATGGTTGAAATGAAAAGCAAAAGGAA GAAGACGAAGAGAGGACTATTTGTCTTCCCACTTCATTCTAGAATGACTGGAGCCAGATATCCATATTTATGGATGAACATAGCAAAGGAGAATGGCTGG CACATCTTGATTGATGCTTGCGCATTGGGACCAAAAGACATGGACAGCTTCGGCCTCTCTCTCATTCGCCCAGACTTCCTCATTTGTTCCTTCTACAAGA TTTTTGGGGAAAATCCGTCTGGATTTGGGTGTCTCTTCGTCAAGAAATCTACTGTTCCCCTCCTAGAAGATTCCGTGAGCGCTGGAATGGTAAGTCTTGT CCCAGCAAATAAGATGTTTCGGTTAGTGGATGAATTTTCTGGTACTGATTCAGACTTTGAACATCTATCCAAGTTGGGATTACAAGAAGATGAATTAGAC TCATCTAACTCTTTCTCAGGGCCTATATCCAGCCAGACAATGCATTCTGGAAGAGTAGAACAAGGAGAAACCTCTGAGTCTCAAACTACAGGAACAACTG CAAAACAGAAAGTATCAAAAACTTCAGATATTGTGGAATCAGGGAAGTCTGCTGAAGTAATGCGACAAGAAAATGGGATCTTGGAAATTGAATGCAGGGG GTTGGATCAGGTTGATTCATTGGGACTGACACGGATAAGTAACAGAGCAAGGTGCCTTATAAATTGGATGGTGAATGCTTTGTTGAAACTCAAGCATCCA AACACGGGGGAAATTCCCCTTGTTAGAATATATGGTCCAAGGGTAAAGTTTGATAGAGGACCTGCATTAGCCTTCAATCTGTTTGACTGGAAAGGAGAAA AGGTTGAGGCTCCTCTTGTACAAAAACTAGCTGATCGAAGCAATATATCTCTTAGCTACGGATTCTTACATCATATCTCATTCTCAGACGAGTACGAAGA GGAAAAGGCAACTGTTCTAGAGAAGAGGGTGAATGGAGCAAAGGGAACTGTAACAAACAAAAGAAAAGAGAAAGCTGATTTTGGAATAACAGTTGTTACA GTTGCACTTGGAGTCCTGGCCAATTTTGAGGACACTTACAGGTTTTGGGCTTTCATTGCTCAATTCCTGGATGCTGACTTTGTGGAGAAGGCAAAGTGGA GATATACAGCTCTAAACCAGAAAACTGTTGAAGTTTAA
AA sequence Show only first row Show all	>Potri.015G137900.3 pacid=42775146 polypeptide=Potri.015G137900.3.p locus=Potri.015G137900 ID=Potri.015G137900.3.v4.1 annot-version=v4.1 MQPRCLKEVSQACLSGCCPSPILGFSEPLNKISKPRSTSATCRQNFAKTTTSSIFPNTHFTNPESLPSLQESFNGFIEVYPQYSDTYQVDQTRAQEYNHL ALSNHTCLDYIGIGLFSYAQLQKLDSEKQILPSASSPPQNMHIPFFSVSYKTGNLKTQLLHGGQESALESAMKKRIMSFLNISENDYSMVFTANRTSAFK LLAESYPFKTSRKLLTVYDYESEAVEAMINSSDKKGAQVMSAEFSWPRLRIQSAKLRKMVEMKSKRKKTKRGLFVFPLHSRMTGARYPYLWMNIAKENGW HILIDACALGPKDMDSFGLSLIRPDFLICSFYKIFGENPSGFGCLFVKKSTVPLLEDSVSAGMVSLVPANKMFRLVDEFSGTDSDFEHLSKLGLQEDELD SSNSFSGPISSQTMHSGRVEQGETSESQTTGTTAKQKVSKTSDIVESGKSAEVMRQENGILEIECRGLDQVDSLGLTRISNRARCLINWMVNALLKLKHP NTGEIPLVRIYGPRVKFDRGPALAFNLFDWKGEKVEAPLVQKLADRSNISLSYGFLHHISFSDEYEEEKATVLEKRVNGAKGTVTNKRKEKADFGITVVT VALGVLANFEDTYRFWAFIAQFLDADFVEKAKWRYTALNQKTVEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.015G137900 [exp]	0	1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.007G048900 [exp]	3.46	0.7090
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Potri.006G124200 [exp]	4.24	0.7020
AT1G77810			Galactosyltransferase family p...		Potri.005G171400 [exp]	6.32	0.6795
AT5G36930			Disease resistance protein (TI...		Potri.010G231200 [exp]	8.66	0.6913
AT1G69050			unknown protein		Potri.010G138700 [exp]	10.95	0.6723
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063500 [exp]	16.58	0.6765	RKF1.1
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	16.73	0.6669
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.008G155100 [exp]	17.74	0.6585
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.006G064200 [exp]	19.07	0.6720	Pt-CRCK3.1
AT4G16845		VRN2	REDUCED VERNALIZATION RESPONSE...		Potri.003G081400 [exp]	20.12	0.6030

Compare expression of checked genes

Potri.015G137900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.