Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51890 330 / 6e-114 Peroxidase superfamily protein (.1) AT5G42180 225 / 9e-73 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT1G05260 180 / 7e-55 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 177 / 7e-54 Peroxidase superfamily protein (.1) AT5G15180 176 / 1e-53 Peroxidase superfamily protein (.1) AT3G01190 175 / 3e-53 Peroxidase superfamily protein (.1) AT3G21770 175 / 5e-53 Peroxidase superfamily protein (.1) AT1G05250 171 / 3e-51 Peroxidase superfamily protein (.1) AT1G05240 171 / 3e-51 Peroxidase superfamily protein (.1) AT5G14130 164 / 7e-49 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108900 [exp] 242 / 3e-79 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.002G018000 [exp] 236 / 1e-76 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 189 / 2e-58 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 189 / 3e-58 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 187 / 2e-57 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 187 / 2e-57 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 187 / 2e-57 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 187 / 2e-57 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 179 / 9e-55 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031664 [exp] 332 / 1e-114 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10027405 [exp] 329 / 3e-113 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10034547 [exp] 221 / 6e-71 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10005614 [exp] 214 / 2e-68 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10017288 [exp] 214 / 4e-68 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10028736 [exp] 172 / 4e-52 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039445 [exp] 170 / 5e-51 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10027163 [exp] 169 / 1e-50 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10018374 [exp] 168 / 3e-50 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10039681 [exp] 167 / 5e-50 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.015G138300.1 pacid=42775752 polypeptide=Potri.015G138300.1.p locus=Potri.015G138300 ID=Potri.015G138300.1.v4.1 annot-version=v4.1 ATGGCTGTTTTTGCATCAAACTTAATGTCTTTAGCGATTAGCTTTCTCCTCCTAATCTTGATTTCGCCTTCGAAAGCTGTGCTTAATAATGCTCATTATT ATGATCAAACATGTCCACAAGCAGAGAAGATAATTTTTGAGACAGTTCGTAATGCTTCCATGCATGATCCTAAAGTCCCAGCTCGTATACTTGGGATGTT CTTTCATGACTGCTTCATAAGGGCATCTAAGCTTGAAATGGCTTGTCCACACACGGTTTCATGTGCTGATATCATAGCCATAGCAGCAAGAGATGTCGTG ACCATGTCTGGAAAACCTTCTTGGAATGTGCTGACAGGAAGGAAAGATGGAAGAGTGTCTAAAGCTAATGATACAATTACCTTACCAGCTCCAACCTTCA ATGCTATGCAATTAATTCAAAGCTTTGCTAAGAGAGGTCTAGGAGTTAAAGACTTGGTAGCTTTGTCAGGTGGCCACAATTTAGGGTTCTCACATTGCTC TTCTTTCGAAGCTCGACTTCAAAACTTTAGTTCAGTTCATGACATTGATCCAAGCATGAATACTCGGTTTGCTGGGAATCTTAAAAGGAAATGCCCTAAA CCAAACAAGGATCACAGTGCAGGAGAATTCTTGGACTCAACCTCATCAACATTCGATAATGACTATTACAAGAGAGATATCGAAGGAAAAGGTATCTTTG GTTCATATCATGCACTGCTTGGTGATTACAGAGAATTTGCAGCTTCAATGATAAAACTTGGAAAAGTCGGGGTAATAAAAAATGGAGAAGTGAGGTTTAA GTGCCGAGTGGTTAATTAA
AA sequence Show only first row Show all	>Potri.015G138300.1 pacid=42775752 polypeptide=Potri.015G138300.1.p locus=Potri.015G138300 ID=Potri.015G138300.1.v4.1 annot-version=v4.1 MAVFASNLMSLAISFLLLILISPSKAVLNNAHYYDQTCPQAEKIIFETVRNASMHDPKVPARILGMFFHDCFIRASKLEMACPHTVSCADIIAIAARDVV TMSGKPSWNVLTGRKDGRVSKANDTITLPAPTFNAMQLIQSFAKRGLGVKDLVALSGGHNLGFSHCSSFEARLQNFSSVHDIDPSMNTRFAGNLKRKCPK PNKDHSAGEFLDSTSSTFDNDYYKRDIEGKGIFGSYHALLGDYREFAASMIKLGKVGVIKNGEVRFKCRVVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51890			Peroxidase superfamily protein...		Potri.015G138300 [exp]	0	1
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Potri.007G067000 [exp]	1.41	0.9505
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Potri.008G076500 [exp]	2.44	0.9373
					Potri.001G338300 [exp]	6.63	0.9274
					Potri.002G133566 [exp]	7.34	0.8959
					Potri.010G199150 [exp]	14.49	0.9218
AT4G15910		ATDI21	drought-induced 21 (.1)		Potri.010G012100 [exp]	15.29	0.8613
AT2G23770			protein kinase family protein ...		Potri.005G128200 [exp]	15.65	0.8547
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.001G135950 [exp]	15.81	0.8982
AT3G17380			TRAF-like family protein (.1)		Potri.008G199400 [exp]	17.43	0.9185
					Potri.013G066750 [exp]	18.46	0.9164

Compare expression of checked genes

Potri.015G138300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.