Plant FIBer expression Database

Potri.015G138400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52110 298 / 8e-102 CCB2, HCF208 HIGH CHLOROPHYLL FLUORESCENCE 208, COFACTOR ASSEMBLY OF COMPLEX C, Protein of unknown function (DUF2930) (.1), Protein of unknown function (DUF2930) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027422
[exp]
332 / 1e-114 AT5G52110 305 / 3e-104 HIGH CHLOROPHYLL FLUORESCENCE 208, COFACTOR ASSEMBLY OF COMPLEX C, Protein of unknown function (DUF2930) (.1), Protein of unknown function (DUF2930) (.2)
Lus10005770
[exp]
313 / 1e-106 AT5G52110 287 / 8e-97 HIGH CHLOROPHYLL FLUORESCENCE 208, COFACTOR ASSEMBLY OF COMPLEX C, Protein of unknown function (DUF2930) (.1), Protein of unknown function (DUF2930) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0161 GAF PF11152 CCB2_CCB4 Cofactor assembly of complex C subunit B, CCB2/CCB4
Representative CDS sequence
>Potri.015G138400.1 pacid=42774803 polypeptide=Potri.015G138400.1.p locus=Potri.015G138400 ID=Potri.015G138400.1.v4.1 annot-version=v4.1
ATGAGCAGTCTTTCCATCCACCCCTTAATTCAGTTAAAAACCCACCATCAATTTCGCGCCAAAAAAACCAGAAAATCCATAGCTATCCATGCTTCCAGTG
ATAACCCTCAAAACCAAAGACAACAACAACAACAACTCAATCTCTCTGTTCTTCGTTTCACTTTTGGGATACCTGGACTGGATGAATCTTACTTACCAAG
ATGGATTGGATATGGGTTTGGTTCCCTTTTGATATTGAATCATTTTCTGGGGTCTAATCCAGACACCACTCAAGCACAGCTGAGAACTGAGGTTTTAGGA
CTTTCTTTGGCTGCTTTCTCTGCTGCACTTCCGTACTTTGGAAGGTTTCTTAAGGGTGCTACTCCAGTCGATCAGGGAACTCTTCCTCAAGATGCCGAGC
AAATTTTTGCAATGTCCCAGAATATTTCTGATGCTCAGAAGGAGGATTTGGCATGGGCAACATACATTTTATTGCGCAATACAAATACCATAGCTGTGTT
GATATCAATTCAAGGTGAATTATGTGTTCGTGGATATTGGAAGACTCCAGATAAGATGTCAAAAGATGAAGTGCTTGATTGGTTTAAGGAACAGATTGAA
AATATTGGCTTGTCTGACGTGAAGGACACCCTCTATTTTCCTCAGACTACAGAATCTGAGATTTGGGAGATGCTTCCCGAGGGAACTCGTTCGCTACTGG
TAGAGCCTGTGCTTCAAGCAACAGTCCAAAGTGGCAATAAGACAGAAAATAATGAAGGTTTTATTCTGTTGGCTTCAAGCATAGGGTATGCTTATAGTGA
TAAAGACAGAGCCTGGATAAGAGCAACTGGAAACAAATTTAGAGGTAAAAGCACATGTTCAGAATTATAA
AA sequence
>Potri.015G138400.1 pacid=42774803 polypeptide=Potri.015G138400.1.p locus=Potri.015G138400 ID=Potri.015G138400.1.v4.1 annot-version=v4.1
MSSLSIHPLIQLKTHHQFRAKKTRKSIAIHASSDNPQNQRQQQQQLNLSVLRFTFGIPGLDESYLPRWIGYGFGSLLILNHFLGSNPDTTQAQLRTEVLG
LSLAAFSAALPYFGRFLKGATPVDQGTLPQDAEQIFAMSQNISDAQKEDLAWATYILLRNTNTIAVLISIQGELCVRGYWKTPDKMSKDEVLDWFKEQIE
NIGLSDVKDTLYFPQTTESEIWEMLPEGTRSLLVEPVLQATVQSGNKTENNEGFILLASSIGYAYSDKDRAWIRATGNKFRGKSTCSEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52110 CCB2, HCF208 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.015G138400
[exp]
0 1
AT1G45230 Protein of unknown function (D... Potri.002G125700
[exp]
1.00 0.9094
AT3G26085 CAAX amino terminal protease f... Potri.008G181400
[exp]
3.16 0.8721
AT1G25290 ATRBL10 RHOMBOID-like protein 10 (.1.2... Potri.003G019500
[exp]
3.46 0.8607
AT5G46180 DELTA-OAT ornithine-delta-aminotransfera... Potri.011G082800
[exp]
21.00 0.8158
AT3G62910 APG3 ALBINO AND PALE GREEN, Peptide... Potri.014G133400
[exp]
24.26 0.8307 APG3.1
AT4G18160 KCO6, ATTPK3, A... Ca2+ activated outward rectify... Potri.005G203000
[exp]
29.08 0.8503
AT3G55040 GSTL2 glutathione transferase lambda... Potri.008G046800
[exp]
29.59 0.8541
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Potri.002G120600
[exp]
33.76 0.8076
AT1G19800 ABCI14, TGD1 ATP-binding cassette I14, trig... Potri.002G234400
[exp]
36.05 0.8451
AT1G58200 MSL3 MSCS-like 3 (.1.2) Potri.005G154000
[exp]
38.01 0.8091

Potri.015G138400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.