Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62090 551 / 0 SLK2 SEUSS-like 2 (.1.2) AT4G25515 516 / 4e-173 SLK3 SEUSS-like 3 (.1) AT4G25520 489 / 8e-162 SLK1 SEUSS-like 1 (.1) AT1G43850 347 / 7e-106 SEU SEUSS transcriptional co-regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G136100 [exp] 912 / 0 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.003G121800 [exp] 384 / 1e-121 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.002G072900 [exp] 360 / 3e-110 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G186900 [exp] 355 / 1e-108 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 327 / 9e-99 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.013G089900 [exp] 97 / 7e-23 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 96 / 2e-20 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2) Potri.001G109901 [exp] 48 / 5e-06 AT4G25520 44 / 3e-05 SEUSS-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038880 [exp] 803 / 0 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10015002 [exp] 658 / 0 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10042785 [exp] 359 / 3e-110 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10029756 [exp] 357 / 2e-109 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10028635 [exp] 348 / 1e-108 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10018933 [exp] 298 / 4e-91 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2) Lus10006324 [exp] 281 / 6e-85 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10000198 [exp] 176 / 4e-48 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2) Lus10029594 [exp] 138 / 8e-34 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01803 [poplar] [flax] LIM_bind LIM-domain binding protein
Representative CDS sequence Show only first row Show all	>Potri.015G138500.9 pacid=42776401 polypeptide=Potri.015G138500.9.p locus=Potri.015G138500 ID=Potri.015G138500.9.v4.1 annot-version=v4.1 ATGGCACCTTCTCGAGTGGCTGGAGGTTTAGCCCAATCTTCCTCAAGTTCAGGAATTTTCTTCCAAGGGGATGGGCAGTCCAAGGGTTTAGTTAACTCTC GCTTGAGCTCTTCGTTTGGCAACTCATCAAATTCTATTCCTGGAACTGGGCGACCCATTTTGGGTCCAGTTTCTGGGGACATGAATAATGTGGTTTTGAA CAGCGTGGCAAACTCAGGACCGAGTGTTGGGGCGAGTTCTTTGGTGACAGATGCAAATTCAGCACTTTCTGGAGGTCCTCATTTGCAGAGAAGTGCAAGC ATTAATACAGAGTCATATATGCGATTGCCAGCGTCACCTATGTCTTTTTCATCCAATAATATAAGCATTTCAGGCTCTTCAGTTGTTGATGGGTCCTCTG TGGTGCAGCAGGGCAATCATCAGGACCGAAATGTCCAGCAGGTGCTGCAAAATCAGCAGCAACAACATGGGGCTTCAAGTGCTACATCCTTGCCTACATC ACAAATTGGGGGCATGTCACTCCCCTTGGGACCGCGAGGTCAGGGATCCTACCTTCAAGACCCTAATAATCTATCGCAAGTGCAAAAGAAGCCAAGATTG GATGTCAAGCAGGAAGATATTTTGCCGCAGCAGGTGTTGCAACAACTGCTGCAAAGACAGGACTCCATGCAGTTGCAAAGCCGAATTCCACAGCTACAAA ACATGTTTCATCAACAGAGACTGAGGCAACAACAGCAAATTCTCCAATCCATGCCACCATTGCAGAGAGCCCAATTACAGCAGCAGCAGCAGCAGCAGCA GCAGATGCAGTTGAGGCAGCAAATGCAACAGCAGGCCATGCAACCAGCATCTTCCCTGAAGCGTCCCTTTGATGGGGGTATCTGTGCTCGTCGGTTGATG CAATATCTATATCATCAACGGCAACGCCTTGCAGAGAACACTATTGCATATTGGCGGAAATTTGTGGCAGAGTACTATTCTCCACGTGCAAAGAAAAGGT GGTGCTTGTCATTATATGACAATGTTGGGCATCATGCGCTCGGTGTTTTCCCCCAGGCATCTATGGAGGTGTGGCAGTGTGACATTTGCGGCTCTAAGTC TGGAAGAGGTTTTGAGGCAACTTTCGAAGTACTCCCTAGACTTAATGAAATCAAGTTTGGAAGTGGTGTCATTGATGAGCTTTTGTTTTTGGACATGCCA CGTGAAATTAGATTGCCTTCTGGAATAATGATGCTGGAGTATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGTCAGC TTCGTGTTATATTCACCCAGGACTTAAAGATACTGTCTTGGGAATTTTGTGTACGTCGTCATGAAGAACTTCTTCCACGGAGGGTGGTTGCACCACAGGT GAATCAGTTGCTCCAGGTTGCACAGAAATGCCAGAGCACAATTGCTGAAAGTGGATCTGACGGGGTTTCTCAACAGGATTTGCAAACAAACAGCAATATG GTTCTGACGGCTAGTCGCCAGCTTGCGAAGAGTTTAGAGTTGCAGTCGCTGAACGATTTGGGTTTTTCCAAAAGATATGTCAGGTGTCTGCAGATCTCTG AGGTTGTCAACAGCATGAAGGATCTGATTGATTTCTGCCGGGAGCAAAAAGTTGGGCCTATTGAGGGCTTGAAAAGTTATCCTCGGCATGCGACTGCAGC TAAGCTTCAGATACAGAAAATGCAGGAAATGGAGCAGTTAGCAAGTGTTCAAGGTCTGCCAACTGATCGAAACACCCTCAATAAGCTAATGGCATTACAT CCTGGAATAAACAGCCATGTGAATACCAACCATCAAATGGTTGGTCGAGGTACTTTAAGTGGTCCAGCACAGGCTGCTTTGGCATTAACAAACTTCCAGA ATCTGCTCAGGAGGCAGAACTCAATGAATTCAAACTCCAGTTCACAACAGGAGGCTGCTTCACCATTCAATAATTCTAATCAGAGTCCATCCTCAAACTT TCAAGGAACCGCTAACTTCATACCTGGATCCATGCAGAACTTACCTGTGAGTGGCTTTTCTAGTCCACATCTACCTCCCCAACAGCCCCAGCAGATGCAG CAGCGCTCATTGAGCTCTAATAGCTTACTCCAACAGAGCATTCCACAGTCCTCCCAAGGCAACCAGGCCTTGCAACCACACATGATCCAGCAGCTGTTGC AGGAAATGTCCAATAACAGTGGGGGAGGAGTCCAACAACATTCCCTCTCTGGACAGAGTGGGAATGGTGGCATGACAAGGAGTGGATTGGGTTTTGGAAG CAACACTTTGGCAACACCTCCAACTGCTTCCACTGTGTCTGTAGGTGCTGGAGGACTTGCACCAAGCCGGAGCAACAGTTTTAAAGCCGCTGCAAACAGT GATTCTTCAGCAGCTGGTGGCAACAGTGGGTTTAACCAGAAAGTGCTAGATTTGCCTCCAAATCTTCATCTGCAGGACGACCTGGTTAGTGATATTGCCC ATGAGTTCACTGAAAATGGTTTTTTTAACAGTGACCTTGATGATAACATGGGTTATGGTTGGAAGGCGTGA
AA sequence Show only first row Show all	>Potri.015G138500.9 pacid=42776401 polypeptide=Potri.015G138500.9.p locus=Potri.015G138500 ID=Potri.015G138500.9.v4.1 annot-version=v4.1 MAPSRVAGGLAQSSSSSGIFFQGDGQSKGLVNSRLSSSFGNSSNSIPGTGRPILGPVSGDMNNVVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSAS INTESYMRLPASPMSFSSNNISISGSSVVDGSSVVQQGNHQDRNVQQVLQNQQQQHGASSATSLPTSQIGGMSLPLGPRGQGSYLQDPNNLSQVQKKPRL DVKQEDILPQQVLQQLLQRQDSMQLQSRIPQLQNMFHQQRLRQQQQILQSMPPLQRAQLQQQQQQQQQMQLRQQMQQQAMQPASSLKRPFDGGICARRLM QYLYHQRQRLAENTIAYWRKFVAEYYSPRAKKRWCLSLYDNVGHHALGVFPQASMEVWQCDICGSKSGRGFEATFEVLPRLNEIKFGSGVIDELLFLDMP REIRLPSGIMMLEYAKAVQESVYEQLRVVREGQLRVIFTQDLKILSWEFCVRRHEELLPRRVVAPQVNQLLQVAQKCQSTIAESGSDGVSQQDLQTNSNM VLTASRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKVGPIEGLKSYPRHATAAKLQIQKMQEMEQLASVQGLPTDRNTLNKLMALH PGINSHVNTNHQMVGRGTLSGPAQAALALTNFQNLLRRQNSMNSNSSSQQEAASPFNNSNQSPSSNFQGTANFIPGSMQNLPVSGFSSPHLPPQQPQQMQ QRSLSSNSLLQQSIPQSSQGNQALQPHMIQQLLQEMSNNSGGGVQQHSLSGQSGNGGMTRSGLGFGSNTLATPPTASTVSVGAGGLAPSRSNSFKAAANS DSSAAGGNSGFNQKVLDLPPNLHLQDDLVSDIAHEFTENGFFNSDLDDNMGYGWKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.015G138500 [exp]	0	1
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.005G202000 [exp]	8.18	0.7889
AT4G28240			Wound-responsive family protei...		Potri.013G147700 [exp]	11.35	0.7057
AT4G11860			Protein of unknown function (D...		Potri.001G112300 [exp]	13.63	0.7669
AT1G10390			Nucleoporin autopeptidase (.1....		Potri.001G453200 [exp]	14.00	0.7754
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.006G239900 [exp]	17.86	0.7155
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.003G097600 [exp]	27.05	0.7564
AT2G46900			unknown protein		Potri.002G183500 [exp]	27.54	0.7415
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020100 [exp]	33.67	0.7058
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.014G055900 [exp]	42.33	0.7163
AT1G21380			Target of Myb protein 1 (.1)		Potri.002G075500 [exp]	42.49	0.7528

Compare expression of checked genes

Potri.015G138500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.