Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33720 359 / 6e-119 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 357 / 3e-118 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45550 352 / 3e-116 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45570 352 / 4e-116 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 337 / 1e-110 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 323 / 6e-105 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G52970 323 / 7e-105 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 305 / 4e-98 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT1G33730 275 / 2e-88 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT4G12300 278 / 2e-87 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G137200 [exp] 620 / 0 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G109300 [exp] 486 / 1e-168 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G136600 [exp] 480 / 2e-166 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136800 [exp] 478 / 2e-165 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G025200 [exp] 412 / 6e-140 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 361 / 6e-120 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 355 / 2e-117 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 339 / 2e-111 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.005G029800 [exp] 327 / 3e-106 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005765 [exp] 534 / 0 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 509 / 5e-178 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027428 [exp] 506 / 1e-176 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027425 [exp] 496 / 7e-173 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10005766 [exp] 482 / 4e-167 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10006323 [exp] 440 / 8e-151 AT1G33720 371 / 1e-123 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Lus10040353 [exp] 424 / 1e-144 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10005767 [exp] 423 / 4e-144 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027429 [exp] 419 / 2e-142 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027426 [exp] 413 / 3e-140 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.015G138900.1 pacid=42775212 polypeptide=Potri.015G138900.1.p locus=Potri.015G138900 ID=Potri.015G138900.1.v4.1 annot-version=v4.1 ATGGATCAAACATCTTTGACAAAAGTGCTCAACCTCTTAGCTCCTCCCTTTCTCCTCCTTCTACCTCTTCTCTTCTTCATCCTCAAGTGCGTTTCCTCAC CCTCTTCTAAAAACCAGTCTCTTCCACCAGGTCCCAAGCCATGGCCTATCATAGGCAACATTCTCCACTTTGGAAAAAAGCCTCATATCTCAACGGCAAA CTTTGCCAAAACTCATGGCCCTTTAATCTCACTAAAACTAGGAAAACAACTTCTCATTGTTGGGTCCTCGAAGAGGGCAGCAACTGAAATTCTGAAATCT CATGACCGTTTGCTCTCTGCTAGATATGTGTTTAAAGCAGCTCTTTTTGAAAACCATGTCCTTGACCGCATATCAATTGTTTGGGCCACACAGTGCTCTG ATGGATGGAAGTCTTTGAGAGCCTTGTGCAGGAACGAGCTATTCTCAGCTAAAGCAATAGAGTCACAAGCTGTTTTGAGAGAGAAGAAGATGGGGGAGAT GGTGGGATTTATAGGAAGAAGAGAAGGGGAGGTTGTTGGTATTGGAGAAGTTGTGCTTGCTATTGTTTTTAACACAATAGCTAACCTTTTATTCTCTGTA GATTTGATTGGATTGGAAGATGACGGAGCTACTACTGGATTGAAAAGCCTTATGTGGAGGATGATGAAGTTAGGGGCTACACCAAATATTGCTGATTTTT ATCCTATACTTGGAGGTATAGATCCTCAAGGTCTAAAAAGAAAGATGGCAGTATGTGTTAATCAAATGTTTGACATATGGGGAAAATACATCAAGGAAAG AAGAGAAAAGCATGTCCACGATGGTCCAAGAAGCGATTTCTTGGATGTTTTTCTTGCGAACGGATTCGAAGATCTTCAAATCAATTGGTTGGCTCTGGAG CTGCTTAGTGCAGGCACAGACACAACAGCCACGACAGTAGAGTGGGCAATTGCTGAGCTGCTGAAGAACAAAGAAGTCTTGAAGAAAGTTAGCGAGGAGA TAAAGAGAGAAACAGACACAAATTCGCTGAAAGAATCCCATGTCTCTCAACTTCCTTACTTGAATGCTTGTGTAAAGGAAACACTCAGGTTACATCCTCC TGTGCCATTTCTTATTCCACGCAGAGCTCTTGAGACCTGTAAGGTTATGGATTACACGATTCCAAGAGATTCTGAAGTGATTGTGAATGTTTGGGCTGTA GGGCGTGATCCCTGGCTCTGGGAAGACCCTTTATCGTTCAAGCCTGAAAGGTTCCTAGGCTCTGATCTGGACTTCAAGGGGCAGGATTTCGAGTTTCTAC CTTTTGGTGCAGGAAGAAGAATTTGCCCTGGACTACCCATGGCTGCCAAGCAAGTTCATTTGATTATCGCCACTTTGTTATATTACTTCGATTGGTCTCT TCCAAACGGTGAGGATCCTGCCATGTTAGACATGAGTGAAAAGTTTGGCATAACATTACAGAAGGAACAGCCTCTACTTGTTGTTCCTAGACGAAGAATT TGA
AA sequence Show only first row Show all	>Potri.015G138900.1 pacid=42775212 polypeptide=Potri.015G138900.1.p locus=Potri.015G138900 ID=Potri.015G138900.1.v4.1 annot-version=v4.1 MDQTSLTKVLNLLAPPFLLLLPLLFFILKCVSSPSSKNQSLPPGPKPWPIIGNILHFGKKPHISTANFAKTHGPLISLKLGKQLLIVGSSKRAATEILKS HDRLLSARYVFKAALFENHVLDRISIVWATQCSDGWKSLRALCRNELFSAKAIESQAVLREKKMGEMVGFIGRREGEVVGIGEVVLAIVFNTIANLLFSV DLIGLEDDGATTGLKSLMWRMMKLGATPNIADFYPILGGIDPQGLKRKMAVCVNQMFDIWGKYIKERREKHVHDGPRSDFLDVFLANGFEDLQINWLALE LLSAGTDTTATTVEWAIAELLKNKEVLKKVSEEIKRETDTNSLKESHVSQLPYLNACVKETLRLHPPVPFLIPRRALETCKVMDYTIPRDSEVIVNVWAV GRDPWLWEDPLSFKPERFLGSDLDFKGQDFEFLPFGAGRRICPGLPMAAKQVHLIIATLLYYFDWSLPNGEDPAMLDMSEKFGITLQKEQPLLVVPRRRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.015G138900 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Potri.016G102500 [exp]	3.16	0.8975
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027300 [exp]	6.48	0.8485
AT5G38260			Protein kinase superfamily pro...		Potri.017G117340 [exp]	9.48	0.8629
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.008G170100 [exp]	10.19	0.8625
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038800 [exp]	10.81	0.8222
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025800 [exp]	11.22	0.8419
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016500 [exp]	13.96	0.8571
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Potri.001G321600 [exp]	14.89	0.7530	SBP.1
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147400 [exp]	15.74	0.8031
AT2G17440		PIRL5	plant intracellular ras group-...		Potri.003G090100 [exp]	17.23	0.8341

Compare expression of checked genes

Potri.015G138900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.