Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38180 358 / 1e-112 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT4G15090 312 / 1e-94 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 310 / 6e-94 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT3G06250 290 / 5e-87 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT2G32250 282 / 7e-84 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT5G18960 281 / 1e-83 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT1G76320 275 / 1e-81 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT2G27110 275 / 1e-80 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT4G38170 253 / 2e-75 FRS9 FAR1-related sequence 9 (.1) AT4G19990 243 / 7e-70 FAR1_related FRS1 FAR1-related sequence 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G137500 [exp] 929 / 0 AT4G38180 289 / 6e-87 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 368 / 5e-116 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 354 / 4e-111 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209000 [exp] 353 / 2e-110 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 349 / 5e-109 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.008G011800 [exp] 324 / 7e-99 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.016G058700 [exp] 313 / 1e-95 AT4G38180 345 / 8e-107 FAR1-related sequence 5 (.1) Potri.009G158400 [exp] 311 / 7e-94 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.016G018300 [exp] 308 / 3e-93 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 232 / 2e-67 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10010073 [exp] 50 / 5e-06 AT1G64260 155 / 3e-39 MuDR family transposase (.1) Lus10023137 [exp] 44 / 0.0001 AT5G18960 46 / 3e-06 FAR1-related sequence 12 (.1) Lus10026854 [exp] 43 / 0.0008 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.015G139300.4 pacid=42775526 polypeptide=Potri.015G139300.4.p locus=Potri.015G139300 ID=Potri.015G139300.4.v4.1 annot-version=v4.1 ATGGAAATTGGACTTCCAACGTCAGATAGGATGGACTTGAACATAGATCAGGACTGTTGTAGTTCAAATTCTGCACTGGTAAATGCATCTCAACTCAGTG CTTCATCAAAAGATGATGCTTATAGGGGTGGGTTACTAAAAATTGGTACAGAGTTTGAATCTGACGAACATGCTTACAGAATTTACAACAAGTATGCCAA AGTGGTAGGCTTCAGTGTTCGAAAAGATTGGTTAAATAGGAGTAAGGTGCATGGTCTAGTGGTCTCTAGAAAGTTTACTTGCTCTAAGGAAGGTTATCGG CGGAAAGACAAGAGAGACCTTAATGTGAAGAAGCGTCAGAAAGAAACAAGAACTGGTTGCTTGGCTCACATGATTGTCACTCGCCAGCCTGATGGTAAAT ACAGAGTGACACATTTTGAAGCAGAGCATAATCATGATAGTATAGAACCAAATAATGCTGACACACAGCTATTACAGAGCGAGTTATTTGTTGATCAAGC TGCTAAAGCTGACTTGTCTAGAAACTCAGGGACAGAATCAAGCTCAAACTATGGACTGATGAATAGACGAATTGAAGTTTGTCAATCTCTTGATTATCTG GCCATGGATTTTGAAAATTCCCTACGGTCTGAAAGGATTAGAGATATGAAGGAGGGGGAAGCAGGACGTTTGTTGCGTTATTTTCATAGGCAACACATTG AAAATCCATCATTTATTCATGGCATTCAGGTTGATATTGATGACAAAGTATGTAACATATTCTGGGCTGACGATAAAATGGTAGTGGATTATGACCATTT TGGTGATGTGGTTTGTTTGGACACTATTTACCGAACAAATAAAGATCTTCAGCCATTTGTACAGTTCATGGGAGTGAACCATCACAATCAAGCAATAATA TTTGCTGCTGCACTTTTATTCGATGACACTGTTGAATCGCTCAAGTGGCTGTTTAATACATTTCTAGAGGCAATGTCTGGAAAGAAGCCAAAAGTCATTC TTACAGATCAAGATGCAGCAATAGCAGAAGCAGTCAATTCAATTTTACCAGAAACAAGCCATCGTATCTGTGTTTGGCAGATGTACCAGAATGTTCTTAA GCATCTTAGCCATTTAGTGAAGGATATTGAATCCTTTTCTTGTGACTTTCGAAGTTGTATTTATGAATCCAATTACGAGGAGGCTTTCGTTCATGCTTGG GAGGGTCTGCTGGACAAATATGGCCTTCAACAAAATGAGTGGCTAAGATGGATGTTTAGAGAAAGAGAGAAGTGGTCCATAGTATATGGCAGTAACACAT TTTTTCTTGACATGAAAGGCACACATGTGGTTGAAGATTTATCTAATAACTTGAGAAGTTATCTAAACTCTGACCAAGATGCGCTTCAGATTTTCAAGAT TTTTGAAAGGGTGGTAAATGAGCAACGTGTCAAAGAAATACATGCTAATGATGAAATGACTAGATGCATGCCAAGGTTACTAGGTAATGTAGTTTTGCTA AAGCATGCAAGTGCTAGTTATACGCCAAAGGCATTTGAAATATTTCAGAAGGAATATGAGAAGTGTTTAAATGTCGAAGTCAGCCAGTGCAATGAGAATG GATTTTTGCTTGAATACAAAGTCAATACATTTGGACGGACTCAAGAATATACAGTCACAATCAATTCAACAGATGACACAGTAGTTTGCAATTGCATGAA ATTTGAGAATGTCGGATTTTTATGCGGCCATACTTTGAAAGTTCTTGATAATCGGAACATAAAGATGGTTCCATCCCGATATATCTTGAAGAGATGGACA AAAGATGCAAGGCTCGGAAGAGCAAGAAATAGCAATGATTTCGCTGCTCAAGAAAACCCAAAGTTGGTTGTAGCTAACCGTTACAAAGATTTGTGCCGCA ACATATTGAAAATGTCAGCCAGGGCAGCTGAATCAGAGGATGCATTTCAGTTTTCCTTAAGAAAACTAGATGAGTTAATTGAAGGGGCGGAGAAGGTCTT GATGTTGAAACCTGATGAGGGTCAAGGCATCTATTCAAGTAGCACCATAGTGAATGGTCACGAAAGTGAAAATGCAGAGGTTTTCTTGAATGAGAAGGCA ATCGAGGATCAAGGAGAAGACAACAGAGTGGAGGATCAAAAGAAAGGGAGAGTGATGTTCCTGATAGACATCAACTGA
AA sequence Show only first row Show all	>Potri.015G139300.4 pacid=42775526 polypeptide=Potri.015G139300.4.p locus=Potri.015G139300 ID=Potri.015G139300.4.v4.1 annot-version=v4.1 MEIGLPTSDRMDLNIDQDCCSSNSALVNASQLSASSKDDAYRGGLLKIGTEFESDEHAYRIYNKYAKVVGFSVRKDWLNRSKVHGLVVSRKFTCSKEGYR RKDKRDLNVKKRQKETRTGCLAHMIVTRQPDGKYRVTHFEAEHNHDSIEPNNADTQLLQSELFVDQAAKADLSRNSGTESSSNYGLMNRRIEVCQSLDYL AMDFENSLRSERIRDMKEGEAGRLLRYFHRQHIENPSFIHGIQVDIDDKVCNIFWADDKMVVDYDHFGDVVCLDTIYRTNKDLQPFVQFMGVNHHNQAII FAAALLFDDTVESLKWLFNTFLEAMSGKKPKVILTDQDAAIAEAVNSILPETSHRICVWQMYQNVLKHLSHLVKDIESFSCDFRSCIYESNYEEAFVHAW EGLLDKYGLQQNEWLRWMFREREKWSIVYGSNTFFLDMKGTHVVEDLSNNLRSYLNSDQDALQIFKIFERVVNEQRVKEIHANDEMTRCMPRLLGNVVLL KHASASYTPKAFEIFQKEYEKCLNVEVSQCNENGFLLEYKVNTFGRTQEYTVTINSTDDTVVCNCMKFENVGFLCGHTLKVLDNRNIKMVPSRYILKRWT KDARLGRARNSNDFAAQENPKLVVANRYKDLCRNILKMSARAAESEDAFQFSLRKLDELIEGAEKVLMLKPDEGQGIYSSSTIVNGHESENAEVFLNEKA IEDQGEDNRVEDQKKGRVMFLIDIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.015G139300 [exp]	0	1
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	5.56	0.8027
AT2G43770			Transducin/WD40 repeat-like su...		Potri.013G128001 [exp]	5.83	0.7008
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G034200 [exp]	7.48	0.6870
AT3G59780			Rhodanese/Cell cycle control p...		Potri.014G182410 [exp]	8.48	0.7053
AT3G14120			unknown protein		Potri.001G165900 [exp]	9.16	0.7436
AT3G15690			Single hybrid motif superfamil...		Potri.003G061400 [exp]	10.81	0.7049
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Potri.010G190100 [exp]	11.22	0.7312
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	13.78	0.7109
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.014G083401 [exp]	16.73	0.7043
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.007G131500 [exp]	16.94	0.6741

Compare expression of checked genes

Potri.015G139300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.