Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03620 548 / 0 MATE efflux family protein (.1) AT5G17700 531 / 0 MATE efflux family protein (.1) AT1G33110 457 / 4e-158 MATE efflux family protein (.1.2) AT1G33100 457 / 9e-158 MATE efflux family protein (.1) AT1G33080 448 / 2e-154 MATE efflux family protein (.1.2) AT1G33090 442 / 4e-152 MATE efflux family protein (.1) AT5G65380 412 / 2e-140 MATE efflux family protein (.1) AT5G10420 387 / 1e-130 MATE efflux family protein (.1) AT5G44050 387 / 2e-130 MATE efflux family protein (.1) AT1G47530 385 / 1e-129 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G139500 [exp] 938 / 0 AT3G03620 521 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 725 / 0 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 716 / 0 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.013G069250 [exp] 701 / 0 AT3G03620 491 / 6e-171 MATE efflux family protein (.1) Potri.013G069700 [exp] 483 / 5e-168 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.007G010200 [exp] 448 / 2e-154 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 431 / 2e-147 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 412 / 4e-140 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.015G147600 [exp] 367 / 2e-122 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003869 [exp] 491 / 3e-171 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10020952 [exp] 434 / 4e-149 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 434 / 2e-148 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 431 / 1e-147 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 429 / 4e-147 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10020307 [exp] 397 / 3e-135 AT1G33110 554 / 0.0 MATE efflux family protein (.1.2) Lus10024945 [exp] 399 / 1e-131 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 387 / 1e-130 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 385 / 1e-129 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 382 / 2e-128 AT1G47530 521 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.015G139400.1 pacid=42776077 polypeptide=Potri.015G139400.1.p locus=Potri.015G139400 ID=Potri.015G139400.1.v4.1 annot-version=v4.1 ATGGACAACTCAATACAAGAGAGTCTTCTTGTACCGGAAGAACTGAGCAATGTTGATCTGAAGACAAGAATTTGGACGGAATCTAAGATGATATGGAAGA TTGCATTTCCTGCCATGGTGGCTAGAGTAACTTCATTTGGAATGATTGTGGTGACCCAAGCATTTCTAGGACACATTGGCAAGTTAGAGCTTGCTGCATA CGCTCTCCTACAAAGTTTCATAGTGCGATTTATAAATGGCATTTTGATTGGCATGTCTAGTGCAACCGAAACTTTGTGTGGACAAGCATTTGGAGCAAGA CACGACCACATGATGGGAATTTACTTGCAACGATCATGGATTGTTGATGGTGCAGCTGCAACAATCTTGCTCCCTCTCGTCACTTTCGCAGCTCCTATTT TCAGACTACTTGGCCAAGAGGAGGATGTAGCAATAGCAGCGGGAAACATGTCTCCATGGTTCATTCCCTACGTCTATTATCTTGTGTTTAGCTTGACCAT TCAAATGTACTTACAAGCTCAACTAAAAAACGAAGTTGTCGGGTGGTTTTCTGCTATTTCCTTTGTTCTTCATATCCTTCTGTCCTGGATATTTGTGAAT AAACTTGAGTTAGGAACTGCTGGGGCCATGGGTGCATTGACCATATCTACATGGTCTTTGGTTATTGGATTGTTAGTGTACATCTTTGGAGGTTGGTGTC CAAATACATGGAAGGGATTTACAAAAGCTGCCTTTGCTGATATCCTGCCCGTAGTAAAGCTCTCCATATCATCCGGTTTCATGATTTGCTTAGAAATATG GTACAATTCAATTATAATCTTAGCTGCTGGATACATGAAGAATGCAACCACTGCAATATCTGCTTTCTCAATTTGCCACAACATCCTTGCATGGGAATTC ATGCTTAGCGTTGGCTTTCTTGGCGCTGCATGCGTGAGGGTAGCAAATGAGTTGGGAAGGGGAAACGCTAAAGCTGCAAAATTTTCTATCAAGATTATCC TCAGTACATCAATAGTTATTGGAGTTGTGTTTTGGGTTCTGTGTTTAATCTTTGGTGAAGAAATTTCACACTTTCTTACAAGTGATGAAGAAGTTGCAGA AACTGTGTCAAGCCTTGTTGTGTTGCTTGCTTTCTCCATCTTACTTAATAGTGTTCAACCTGTACTCACAGGTGTGGCTGTTGGAGCTGGTGTGCAAAGT ATGGTTGCATTTGTGAACTTGGGTAGCTATTATATAATTGGGCTACCTGCCGGGATTCTACTCGGATATGTGGTTCATCTTGAAGTTCAAGGTTTATGGA TGGGATTATTGAGTGGAGTTGTAGTGCAAACGCTTATACTCTCCTACATTATCTGGAGGACTGATTGGGATGAGCAGGTGAACAAGGCATCTGAACGTCT TAGACGCTGGTTTTTAAAATCGGAGAAAGATTCCATTGAGAGCTCCACTCCTGCTTGA
AA sequence Show only first row Show all	>Potri.015G139400.1 pacid=42776077 polypeptide=Potri.015G139400.1.p locus=Potri.015G139400 ID=Potri.015G139400.1.v4.1 annot-version=v4.1 MDNSIQESLLVPEELSNVDLKTRIWTESKMIWKIAFPAMVARVTSFGMIVVTQAFLGHIGKLELAAYALLQSFIVRFINGILIGMSSATETLCGQAFGAR HDHMMGIYLQRSWIVDGAAATILLPLVTFAAPIFRLLGQEEDVAIAAGNMSPWFIPYVYYLVFSLTIQMYLQAQLKNEVVGWFSAISFVLHILLSWIFVN KLELGTAGAMGALTISTWSLVIGLLVYIFGGWCPNTWKGFTKAAFADILPVVKLSISSGFMICLEIWYNSIIILAAGYMKNATTAISAFSICHNILAWEF MLSVGFLGAACVRVANELGRGNAKAAKFSIKIILSTSIVIGVVFWVLCLIFGEEISHFLTSDEEVAETVSSLVVLLAFSILLNSVQPVLTGVAVGAGVQS MVAFVNLGSYYIIGLPAGILLGYVVHLEVQGLWMGLLSGVVVQTLILSYIIWRTDWDEQVNKASERLRRWFLKSEKDSIESSTPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03620			MATE efflux family protein (.1...		Potri.015G139400 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	2.00	0.8726
AT5G49800			Polyketide cyclase/dehydrase a...		Potri.004G231000 [exp]	5.00	0.8348
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	6.70	0.8481
AT1G04030			unknown protein		Potri.013G047700 [exp]	7.34	0.8517
AT5G45480			Protein of unknown function (D...		Potri.006G013300 [exp]	9.38	0.8187
AT3G62110			Pectin lyase-like superfamily ...		Potri.002G186900 [exp]	10.09	0.8332
AT1G80133			unknown protein		Potri.018G130700 [exp]	14.14	0.7818
AT1G22800			S-adenosyl-L-methionine-depend...		Potri.013G101900 [exp]	16.97	0.8242
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.010G226250 [exp]	17.74	0.7761
AT4G31360			selenium binding (.1)		Potri.018G004901 [exp]	17.88	0.8227

Compare expression of checked genes

Potri.015G139400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.