Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03620 521 / 0 MATE efflux family protein (.1) AT5G17700 511 / 3e-178 MATE efflux family protein (.1) AT1G33110 437 / 3e-149 MATE efflux family protein (.1.2) AT1G33100 436 / 8e-149 MATE efflux family protein (.1) AT1G33090 428 / 2e-145 MATE efflux family protein (.1) AT1G33080 424 / 8e-144 MATE efflux family protein (.1.2) AT5G65380 390 / 8e-131 MATE efflux family protein (.1) AT5G10420 366 / 3e-121 MATE efflux family protein (.1) AT5G44050 360 / 5e-119 MATE efflux family protein (.1) AT1G47530 360 / 7e-119 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G139400 [exp] 911 / 0 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 694 / 0 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 686 / 0 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.013G069250 [exp] 671 / 0 AT3G03620 491 / 6e-171 MATE efflux family protein (.1) Potri.013G069700 [exp] 463 / 3e-159 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.007G010200 [exp] 422 / 4e-143 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 405 / 1e-136 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 388 / 5e-130 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.019G063500 [exp] 358 / 1e-117 AT3G26590 681 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003869 [exp] 466 / 2e-160 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10002645 [exp] 410 / 2e-138 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 408 / 7e-138 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 405 / 4e-137 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 407 / 9e-137 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020307 [exp] 372 / 2e-124 AT1G33110 554 / 0.0 MATE efflux family protein (.1.2) Lus10024945 [exp] 375 / 9e-122 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 366 / 5e-121 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 365 / 7e-121 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 364 / 1e-120 AT1G47530 704 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.015G139500.1 pacid=42775978 polypeptide=Potri.015G139500.1.p locus=Potri.015G139500 ID=Potri.015G139500.1.v4.1 annot-version=v4.1 ATGCTCAAATCAACTATCTCTCTCCCTCTCTCTCTCTCTGTATCTCCCAAGACCAGCCTCTCTCCTTTTCTCTATCGCTCTCGGAAGACCAGCCAGTCTA ATTTCAAGGCAGAAAAAAAGGTCCAAGATTTTATGTCGATATTATACAAAGAAAAGCTTTGCTCAGGAATGAACAAGAAGGAGAAATGTATTATCATGGA CAACTCAATACAAGAGAGTCTTCTTGTACCGGAAGAACTGAGCAATGTTGATCTGAAGACAAGAATTTGGACAGAATCTAAGATGATATGGAAGATTGCA TTTCCTGCCATGGTGGCTAGAGTAACTTCATTTGGAATGATTGTGGTGACCCAAGCATTTCTAGGACACATTGGCAAGTTAGAGCTTGCTGCATACGCTC TCCTACAAAGTTTCATAGTGCGATTTATAAATGGCATATTGATTGGCATGTCTAGTGCAACCGAAACTTTGTGTGGACAAGCATTTGGAGCAAGACACGA CCACATGATGGGAATTTACTTGCAACGATCATGGATTGTTGATGGTGTATCTGCAACAATCTTGCTCCCTCTCATCATTTTCGCAGCTCCTATTTTCAGA CTACTTGGCCAAGAGGAGGATGTAGCAATAGCAGCGGGAAACATGTCTCCATGGTTCATTCCCTACGTCTATTATCTTGTGTTTAGCTTGACCATTCAAA TGTACTTACAAGCTCAACTAAAAAACAAAGTTGTCGGATGGTTTTCTGCTATTTCCTTTGTTCTTCATATCCTTCTGTCCTGGATATTTGTGAATAAACT TGAGTTAGGAACTGCTGGGGCCATGGGTGCATTGACCATATCTACTTGGTCTTTGGTTATTGGATTGTTAGTGTACATCTTCGGAGGCTGGTGTCCAAAT ACGTGGAAGGGATTTACAAAAGCTGCCTTTGCTGATATCCTGCCTGTAGTAAAGCTCTCCATATCATCCGGTTTCATGATTTGCTTAGAAATATGGTACA ATTCAATTATAATCTTAGCTGCTGGATACGTGAAGAATGCAACCACAGCCATATCTGCTTTCTCACTTTGCCAGAACATCCTTACATGGGAATTCATGCT TAGCTTTGGCTTTCTTGGCGCTGCATGCGTGAGGGTAGCAAATGAGTTGGGGAGGGGAAACCCTGAAGCTGCAAAATTTTCTGTCGAGATTATCCTCAGT ACATCCATAATTATTGGAGTTCTGATTTGGGTTCTGTGTTTAATCTTTGGTAAAGAAATTTCGCGCTTTCTTACAAGTGATGAAGAAGTTGCAGAAACTG TGTCAAGCCTTGCTGTGTTGCTTGCTTTCTCCATCTTACTTAATAGTGTTCAACCTGTACTCACAGGTGTGGCTGTTGGAGCTGGTGTGCAAAGTATGGT TGCATTTGTGAACTTGGGTAGCTATTATATAATTGGGCTACCTGCCGGGATTCTACTCGGATATGTGGTTCATCTTGAAGTTCAAGGTTTATGGATGGGA TTATTGAGTGGAGTTGTAGTGCAAACGCTTATACTCTCCTACATCGTCTGGAGGACTGATTGGGATGAGCAGGTGAACAAGGCATCTGAAAGTCTTAGAC GCTGGTTTTTAAAATCGGAGAAAGATTCCATTGAGAGCTCCGCTCCTGCAGCTTGA
AA sequence Show only first row Show all	>Potri.015G139500.1 pacid=42775978 polypeptide=Potri.015G139500.1.p locus=Potri.015G139500 ID=Potri.015G139500.1.v4.1 annot-version=v4.1 MLKSTISLPLSLSVSPKTSLSPFLYRSRKTSQSNFKAEKKVQDFMSILYKEKLCSGMNKKEKCIIMDNSIQESLLVPEELSNVDLKTRIWTESKMIWKIA FPAMVARVTSFGMIVVTQAFLGHIGKLELAAYALLQSFIVRFINGILIGMSSATETLCGQAFGARHDHMMGIYLQRSWIVDGVSATILLPLIIFAAPIFR LLGQEEDVAIAAGNMSPWFIPYVYYLVFSLTIQMYLQAQLKNKVVGWFSAISFVLHILLSWIFVNKLELGTAGAMGALTISTWSLVIGLLVYIFGGWCPN TWKGFTKAAFADILPVVKLSISSGFMICLEIWYNSIIILAAGYVKNATTAISAFSLCQNILTWEFMLSFGFLGAACVRVANELGRGNPEAAKFSVEIILS TSIIIGVLIWVLCLIFGKEISRFLTSDEEVAETVSSLAVLLAFSILLNSVQPVLTGVAVGAGVQSMVAFVNLGSYYIIGLPAGILLGYVVHLEVQGLWMG LLSGVVVQTLILSYIVWRTDWDEQVNKASESLRRWFLKSEKDSIESSAPAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03620			MATE efflux family protein (.1...		Potri.015G139500 [exp]	0	1
AT1G04030			unknown protein		Potri.013G047700 [exp]	7.54	0.8590
AT3G51280			Tetratricopeptide repeat (TPR)...		Potri.007G056500 [exp]	14.28	0.8614
					Potri.017G113501 [exp]	14.49	0.8753
AT3G54750			unknown protein		Potri.006G199200 [exp]	15.49	0.8517
AT3G15540	AUX_IAA	MSG2, IAA19	MASSUGU 2, indole-3-acetic aci...		Potri.001G177500 [exp]	17.43	0.8402
					Potri.003G179301 [exp]	27.16	0.8301
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.004G031600 [exp]	29.25	0.8583	Pt-ATK1.1
AT4G30410			sequence-specific DNA binding ...		Potri.006G177000 [exp]	30.01	0.8199
AT4G32830		ATAUR1	ataurora1 (.1)		Potri.018G057700 [exp]	31.22	0.8565
AT3G03620			MATE efflux family protein (.1...		Potri.015G139400 [exp]	37.22	0.8097

Compare expression of checked genes

Potri.015G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.