Plant FIBer expression Database

Potri.015G139700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48880 386 / 1e-135 RNI-like superfamily protein (.1.2)
AT4G11580 122 / 2e-32 RNI-like superfamily protein (.1)
AT4G08980 62 / 8e-11 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5)
AT4G05497 50 / 4e-07 RNI-like superfamily protein (.1)
AT5G57900 48 / 4e-06 SKIP1 SKP1 interacting partner 1 (.1)
AT4G05460 45 / 4e-05 RNI-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G137700
[exp]
560 / 0 AT3G48880 389 / 1e-136 RNI-like superfamily protein (.1.2)
Potri.016G019500
[exp]
85 / 7e-19 AT3G48880 76 / 7e-16 RNI-like superfamily protein (.1.2)
Potri.012G106700
[exp]
57 / 3e-09 AT3G48880 55 / 3e-08 RNI-like superfamily protein (.1.2)
Potri.001G373900
[exp]
56 / 6e-09 AT3G48880 50 / 7e-07 RNI-like superfamily protein (.1.2)
Potri.002G099100
[exp]
52 / 2e-07 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027450
[exp]
432 / 9e-154 AT3G48880 434 / 2e-154 RNI-like superfamily protein (.1.2)
Lus10005745
[exp]
429 / 1e-152 AT3G48880 431 / 4e-153 RNI-like superfamily protein (.1.2)
Lus10023277
[exp]
47 / 1e-05 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1)
Lus10038528
[exp]
46 / 2e-05 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF12937 F-box-like F-box-like
Representative CDS sequence
>Potri.015G139700.1 pacid=42775977 polypeptide=Potri.015G139700.1.p locus=Potri.015G139700 ID=Potri.015G139700.1.v4.1 annot-version=v4.1
ATGGAATTTCGTGAAATAGAAGAGTGTGGAACTGTGAGGAGGAGATGGGAGGACATGGACATTGATATCTTGGTGAAGATATTTCAGTCATTGACTGTGT
TTGAATTAACTTCAGGCATTGCTCATGTTTGTAGCTCGTGGCGCTTGGCTGCTTGTGATCCTTTTCTGTGGAGAACTCTTGATTTGTCCATGTTGAAATC
TAATTTCATCAAAATCCCATTAGAGCCTTATGTGTATGTGCATGGTCATTCTGATAAGACATTGACTCGATTCTTGAAGATTTCATTGAGTCTCAGCCGG
GGAAATATAACATCGTTGTTCTTTCACTTCAATTTGTATGTGAGCGAGGACCACTTGACTTATACTGCTCAAAGGTGCCCACGCCTTAAAAGACTTGTTT
TGCCAGCATGGAATCGAGTAGAGACTGTAATGATCAAAGCTATTGAGCTGTGGAAGGATCTTGAATCCCTGACAATGCCTAGTATAGTGAATTCCCCTCG
TCTTGTTCAGGCAATTGCTACTAATTGCAGGAAATTCAGTGAACTCAAGATCATGGGCCCGTTTGACATTTACTTTGCTTCCTCCCTTGTTACCTATCTT
CCAACATTAAAAGTTTTGAGCCTCCGATGCTCAATGCTATATAAGGACACATTGATCTTCGTCTTGGATAATTTGTGTTGCCTAGAAGTGCTCAACATAT
CGCATTGCCTTCTGATAGAAGTCCCACCACCTCCCGCGCCAAGAAGAATTGTTAGGCAGCTTGATAAAACTATCCTGGAGAAGGCTTCTCATTTACACGA
CTTCTTAGCCTGCATGAGTGACACTTGCATCATGTGCCAAAAAACAAGAAATGACGAAGGGCTCATGCGGTGGTACAAGTACGACGAAGGGCTGTGGAAG
GAAGATGAGGTCAGCTCTCTTGCTCTTTGA
AA sequence
>Potri.015G139700.1 pacid=42775977 polypeptide=Potri.015G139700.1.p locus=Potri.015G139700 ID=Potri.015G139700.1.v4.1 annot-version=v4.1
MEFREIEECGTVRRRWEDMDIDILVKIFQSLTVFELTSGIAHVCSSWRLAACDPFLWRTLDLSMLKSNFIKIPLEPYVYVHGHSDKTLTRFLKISLSLSR
GNITSLFFHFNLYVSEDHLTYTAQRCPRLKRLVLPAWNRVETVMIKAIELWKDLESLTMPSIVNSPRLVQAIATNCRKFSELKIMGPFDIYFASSLVTYL
PTLKVLSLRCSMLYKDTLIFVLDNLCCLEVLNISHCLLIEVPPPPAPRRIVRQLDKTILEKASHLHDFLACMSDTCIMCQKTRNDEGLMRWYKYDEGLWK
EDEVSSLAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G48880 RNI-like superfamily protein (... Potri.015G139700
[exp]
0 1
AT5G07610 F-box family protein (.1) Potri.013G067800
[exp]
4.89 0.8575
AT2G38640 Protein of unknown function (D... Potri.016G143000
[exp]
5.56 0.8014
AT1G55000 peptidoglycan-binding LysM dom... Potri.013G021600
[exp]
6.08 0.8681
Potri.001G063309
[exp]
9.16 0.8604
AT5G26770 unknown protein Potri.013G003400
[exp]
9.59 0.7916
Potri.009G001301
[exp]
12.32 0.8416
AT1G24040 Acyl-CoA N-acyltransferases (N... Potri.010G095800
[exp]
14.69 0.8492
AT1G70000 MYB myb-like transcription factor ... Potri.008G191800
[exp]
17.32 0.8138
AT4G21350 PUB8, B80 plant U-box 8 (.1) Potri.011G033300
[exp]
19.07 0.8218
AT2G36090 F-box family protein (.1) Potri.006G208400
[exp]
20.44 0.8162

Potri.015G139700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.