Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52230 81 / 2e-15 MBD13 methyl-CPG-binding domain protein 13 (.1.2) AT3G46580 57 / 5e-09 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) AT5G59380 53 / 1e-07 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1) AT5G59800 54 / 2e-07 ATMBD7, MBD7 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138300 [exp] 1101 / 0 AT5G52230 84 / 2e-16 methyl-CPG-binding domain protein 13 (.1.2) Potri.001G240100 [exp] 49 / 5e-06 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.009G031100 [exp] 45 / 5e-05 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038869 [exp] 101 / 6e-22 AT5G52230 82 / 4e-16 methyl-CPG-binding domain protein 13 (.1.2) Lus10014989 [exp] 100 / 2e-21 AT5G52230 86 / 4e-17 methyl-CPG-binding domain protein 13 (.1.2) Lus10027447 [exp] 64 / 1e-10 AT3G46580 47 / 3e-06 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Lus10005888 [exp] 58 / 2e-08 AT5G59800 123 / 5e-32 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10005460 [exp] 50 / 8e-07 AT5G59380 101 / 1e-27 methyl-CPG-binding domain 6 (.1) Lus10004963 [exp] 51 / 2e-06 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10005748 [exp] 49 / 4e-06 ND 36 / 0.009
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF01429 [poplar] [flax] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G140100.1 pacid=42775753 polypeptide=Potri.015G140100.1.p locus=Potri.015G140100 ID=Potri.015G140100.1.v4.1 annot-version=v4.1 ATGGGGGATCCTAAATCCGATGACTGGTTGCCAGAAGGTTGGAGGGTAGAAGTTAAAGTGAGAAATAGCGGTAAAAAAGATAAGTTTTATTTTCCTCCCA CGGGTGGATTCAGATTCAACTCCAAGATTGAGGTATCTCGCTATCTCAACGGAAGCCATCCTAAATCTGAAGAAAAGGTTGTAATCGAGAAGACTGTACC AGAAGGGTTACCTCTGGGATGGACCAAGGAAATCAAAGTAACAAAGAAAGGTGGCAGAATCAGAAGAGACCCGTTTTACACTGACCCTGTAAGTGGATGT GTTTTCCGCTCCATGAAGGAAGCACATCGCTACATTGAAAGTGGTGTGGTAGGAAGGCTGGCATTCAAGCGAAACCGCAAAGACAACTATGTTGTAGAGT TGAAAGATGATAAAACCTGTTCACCAGCTGTAGCCGAGAAACAAGATTTGGAAGTCAATGAAACACCGAGTCCAGTTACAGGTGACCAGAGCTTGAAGGC ATGTGAAATTGCAAAACATGAACAGATACTCAATTCGGCCTCTACAGGAGAGTGCATAATTGTCTCTGAACATACTTCTGATCAGTATGAGTCAGTAGCC AAGAAACAAAAGTTGGAAGTCAACCGAACACAAAGTTCAATTATAAGTGACCATAGCTTGAAGTCATGCAAAATAGCTAAAGATGAACAGACACTTAGCT TGGCCTCTGCAGGAGAATACACAGCTGTCTCTGAGCATGCTTCTGATAAGTGTGTCTCTGTAGCCAAGAAACAAAAATTGGAAGTCAGTGGAATGCCAAG TCCAATTATAAGTGACCGGACCTGGAAGTCATGTGTAATTGCTAAAGATGAACACATACATGATTCAGCTTCTAGAGGAGAATGCAAGGCTGTCTCTGAG CATACTTCTGATCAGTGTGTGTCTGCAACTAAGAAACAACAATTGACAGTTGACAGAAATCCAAGTTCAATTATAAGTGACCAGAGCTTGAAGTCGTGTG AAATTTCTAAGGACAAACAGATACTTCCTTCAGCCTCTACAGGAGAATGCACAGCTGTCTCCAAGCATACTCTTATCCAGTGTGGAGTAGGAGCTGAATC AAGCAGCTCAGAATTTCCTGAGGCTAAGGGTTCCAACCGAACAGAAGAGAAGTGTGATTTTGTTAGGACTTCATTTGTTGAAGATCCTTCACGTGGTGTT CCAGAGGATAAACTACTATTGGAAGTTGGGGAGACAAGAAAGGAAATTAAAAGGGCTGGATTAAGAAAATCCAAGAATAAAAATGATATCAACCTTCCTC GTCGGGCCTCAAAGCGTCTTGCTGGCATTCCACTAGCTCCAACGCCAGAACTGAAGGCAATAACTCGAGTTCGTCGAGCTGCAGTTGAACCAGGTAATGA GATAATTGCTAGTACAAGTGAGCAGGCTTCCTGTGGTGAGCTTGACACTGAGCTGAATACAAAGAATGCATTTGACACCTCCAAAAGCACAGAAAGGCCA GTGGAGTCAAATGAAAGCAAGCATGGTATTGTGGATATGGAGCATGCTGGAAAGGCAGGATCAGGAAAGGAGAGGAACGAGAAGCATGAATGTGCTGTTA TTTCATCTCCTGGTAAACTCGCTTCTGCAGAACATGGTGGAAAGATTGAAACTGCCAATAATAGTGGTGAGAAGCCAGGACTGCCTTTTGGCCTGCCACT CGAGGAGTTATGGCAAGATCCATGCATTGCCTTTGCAATAAAAACTCTCACTGGCGCTCCTGTTGATTCCGATAGCATTAAAGTGTCACCAGGTTCAAGC AATAATGAATTTGTGGGCATGGCTGTTTTGGATGAGCATGCTGGGAAGGAAGACATTGGGAATAATGGAAATCTGTTTATTCCAGAACATGCTAGAGGGG TTGAAACTAGCAGCAAGGCTGACGAGAAGCCAGTATCTCCTCTCAACTTGCCTTTTGCTGATGCGTGGTCAGACCCCTGCATTGAATTTGCAATAAAAAC TCTCACAGGTGCCATTCCACTGGACTTTGATGTGATTCAGGATTGCCTTCCACAGCAAGCTGGCTCTTTGCAACAGCAACAGAGTAGTGGCTTCACCTTG CCAAATGTAGGTGAGTTTTGCCAAGCTGAATTTTTGTGCCAGCAATTTGGCACTTCAGAGAAGCCTTCATTTAATCAAGCAGCTATGGTAGGGCCTGCAT TGCCGCACACTAAACATGCTAATTTAGGATACTCAGCTGGACCTAGTCGACGCCTGCATAGCGAAGAAAGAAGCAATAAACGTAGAAGATAA
AA sequence Show only first row Show all	>Potri.015G140100.1 pacid=42775753 polypeptide=Potri.015G140100.1.p locus=Potri.015G140100 ID=Potri.015G140100.1.v4.1 annot-version=v4.1 MGDPKSDDWLPEGWRVEVKVRNSGKKDKFYFPPTGGFRFNSKIEVSRYLNGSHPKSEEKVVIEKTVPEGLPLGWTKEIKVTKKGGRIRRDPFYTDPVSGC VFRSMKEAHRYIESGVVGRLAFKRNRKDNYVVELKDDKTCSPAVAEKQDLEVNETPSPVTGDQSLKACEIAKHEQILNSASTGECIIVSEHTSDQYESVA KKQKLEVNRTQSSIISDHSLKSCKIAKDEQTLSLASAGEYTAVSEHASDKCVSVAKKQKLEVSGMPSPIISDRTWKSCVIAKDEHIHDSASRGECKAVSE HTSDQCVSATKKQQLTVDRNPSSIISDQSLKSCEISKDKQILPSASTGECTAVSKHTLIQCGVGAESSSSEFPEAKGSNRTEEKCDFVRTSFVEDPSRGV PEDKLLLEVGETRKEIKRAGLRKSKNKNDINLPRRASKRLAGIPLAPTPELKAITRVRRAAVEPGNEIIASTSEQASCGELDTELNTKNAFDTSKSTERP VESNESKHGIVDMEHAGKAGSGKERNEKHECAVISSPGKLASAEHGGKIETANNSGEKPGLPFGLPLEELWQDPCIAFAIKTLTGAPVDSDSIKVSPGSS NNEFVGMAVLDEHAGKEDIGNNGNLFIPEHARGVETSSKADEKPVSPLNLPFADAWSDPCIEFAIKTLTGAIPLDFDVIQDCLPQQAGSLQQQQSSGFTL PNVGEFCQAEFLCQQFGTSEKPSFNQAAMVGPALPHTKHANLGYSAGPSRRLHSEERSNKRRR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.015G140100 [exp]	0	1
AT1G17665			unknown protein		Potri.003G038600 [exp]	1.41	0.8116
AT1G33050			unknown protein		Potri.001G452300 [exp]	4.89	0.8109
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.002G068700 [exp]	5.91	0.8064
AT2G40570			initiator tRNA phosphoribosyl ...		Potri.018G087300 [exp]	11.48	0.7308
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.008G050400 [exp]	14.28	0.8059
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.016G082900 [exp]	14.49	0.7915
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.005G083800 [exp]	14.79	0.8085
AT2G15900			Phox-associated domain;Phox-li...		Potri.009G108300 [exp]	16.00	0.8071
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	18.73	0.7921
AT5G47940			unknown protein		Potri.009G060000 [exp]	18.89	0.7679

Compare expression of checked genes

Potri.015G140100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.