Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52210 343 / 1e-121 ATGB1, ATARLB1 GTP-binding protein 1 (.1.2) AT5G14670 132 / 8e-39 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G70490 132 / 8e-39 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G10630 132 / 8e-39 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G23490 132 / 8e-39 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT2G47170 131 / 1e-38 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 131 / 2e-38 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G15310 130 / 5e-38 ATARFB1A ADP-ribosylation factor B1A (.1) AT2G24765 127 / 7e-37 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT2G18390 121 / 1e-34 HAL, ARL2, TTN5, ATARLC1 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138500 [exp] 386 / 5e-139 AT5G52210 348 / 7e-124 GTP-binding protein 1 (.1.2) Potri.005G142100 [exp] 134 / 7e-40 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 132 / 7e-39 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 132 / 7e-39 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 132 / 7e-39 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 132 / 7e-39 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 132 / 7e-39 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 132 / 8e-39 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.008G100000 [exp] 131 / 1e-38 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005749 [exp] 363 / 1e-129 AT5G52210 337 / 2e-119 GTP-binding protein 1 (.1.2) Lus10038871 [exp] 348 / 3e-122 AT5G52210 326 / 3e-113 GTP-binding protein 1 (.1.2) Lus10014991 [exp] 342 / 2e-121 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10027446 [exp] 330 / 8e-117 AT5G52210 314 / 1e-110 GTP-binding protein 1 (.1.2) Lus10031436 [exp] 132 / 5e-39 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 132 / 9e-39 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 132 / 1e-38 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 132 / 7e-38 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 132 / 2e-36 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 132 / 2e-35 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.015G140400.2 pacid=42776170 polypeptide=Potri.015G140400.2.p locus=Potri.015G140400 ID=Potri.015G140400.2.v4.1 annot-version=v4.1 ATGTTCTCGTTGTTTTATGGCCTTTGGAAGTATATGTTTAGTAAGACAGAGCTTCATGTGCTCATTCTTGGGATCGACAAGGCTGGGAAGACGACATTGC TGGAGAAACTGAAGTCAGTATACTCAAACTTGGAAGGCCTCCCTCCTGATCGAATTGTCCCAACTGTTGGACTTAATATTGGTCGTATTGAAGTGGAAAA TTCAAAACTGTTGTTTTGGGATCTAGGAGGTCAGCCTGGTCTTCGCTCAATTTGGGAAAAATATTATGATGAGGCACATGCTTTGATATATGTAATTGAT GCTGCTTGCCCATCCCGTTTTGAAGATGCAAAATCTGAGTTGGAAAAAGTTCTTAGGCATGATGAATTGCAGGGAGCCCCTCTTTTGATATTAGCAAACA AGCAGGATCTTCCTGATTCTGTATCGGCAGATGAGGTTGATCGATATCTAGACCTTAAGAAGTTGGATGAAAGGGTTTACATGTTTGAAGCTGTTTCAGC ATATGATGGTATGGGGATCAAAGAAAGTGTAGAGTGGCTCTTGGAGGTAATGGAACGAAGCAAGAGAACTGAGATGTTAAGAGCTCGTGCAGGTGTAACA GGCCCTGGTGCTTAG
AA sequence Show only first row Show all	>Potri.015G140400.2 pacid=42776170 polypeptide=Potri.015G140400.2.p locus=Potri.015G140400 ID=Potri.015G140400.2.v4.1 annot-version=v4.1 MFSLFYGLWKYMFSKTELHVLILGIDKAGKTTLLEKLKSVYSNLEGLPPDRIVPTVGLNIGRIEVENSKLLFWDLGGQPGLRSIWEKYYDEAHALIYVID AACPSRFEDAKSELEKVLRHDELQGAPLLILANKQDLPDSVSADEVDRYLDLKKLDERVYMFEAVSAYDGMGIKESVEWLLEVMERSKRTEMLRARAGVT GPGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Potri.015G140400 [exp]	0	1
AT5G47030			ATPase, F1 complex, delta/epsi...		Potri.014G053000 [exp]	3.87	0.8388	Pt-PPFRU36.1
AT1G67250			Proteasome maturation factor U...		Potri.017G111900 [exp]	5.29	0.8476
AT5G07960			unknown protein		Potri.015G056300 [exp]	5.65	0.8571
AT5G43830			Aluminium induced protein with...		Potri.008G158400 [exp]	5.65	0.8296
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.018G145900 [exp]	13.41	0.8054	Pt-PBA1.1
AT1G80500			SNARE-like superfamily protein...		Potri.003G183400 [exp]	17.29	0.7960
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.003G069900 [exp]	19.33	0.7679	SEC22.2
AT5G51840			unknown protein		Potri.015G135000 [exp]	20.44	0.7634
AT5G36230			ARM repeat superfamily protein...		Potri.013G085600 [exp]	22.13	0.7304
AT5G47890			NADH-ubiquinone oxidoreductase...		Potri.001G071900 [exp]	24.33	0.8064

Compare expression of checked genes

Potri.015G140400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.