Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52200 123 / 9e-36 AtI-2 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138600 [exp] 231 / 2e-78 AT5G52200 137 / 2e-41 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005751 [exp] 188 / 3e-61 AT5G52200 127 / 3e-37 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10027444 [exp] 180 / 1e-57 AT5G52200 123 / 4e-35 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10014992 [exp] 155 / 3e-48 AT5G52200 122 / 5e-35 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10038872 [exp] 149 / 1e-45 AT5G52200 118 / 3e-33 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04979 [poplar] [flax] IPP-2 Protein phosphatase inhibitor 2 (IPP-2)
Representative CDS sequence Show only first row Show all	>Potri.015G140500.2 pacid=42775739 polypeptide=Potri.015G140500.2.p locus=Potri.015G140500 ID=Potri.015G140500.2.v4.1 annot-version=v4.1 ATGAAGGGAGTAAAATGGAACGAGGATAATCTTGGGGAAATTGAAGCAAATAAGCCTGTGAGGCAGAAAATCACCGAACCCAAGACCCCGTATCACCCCA TGATTGATGTCGATGATGATTCTCTTTCTCCAAGGGGGGGCAGCTTTAATGAGGTTATTGAGGATGCAATGCGTGCAGAAGATCTGCGGTCTGCATTGGA TATTATGGCATCCTCAAGTAGAAACCCAGCTAAACGATCTAGTGGCTGGACATCATCCGAGGATGAGGCTGATCCTATGGAACAAGATGAAGAAGATTCT GAAACGGATAGAAGTTCAAGTTTTAGGGAGCTTAGACGAGCACATTATGATGAGTTTCGGAAAGTGAAGGAACTAAGGCGGAAGGGTTCTTTCCTAGAGG ACGAAGATGATGAGGAGAATGGTGCTGAGAAGGAGGGCACTTCATCATTAACTGCTGGTGTGAGAGATATAGAGATTGAAGAAGGTGCTGCAACTTCACA TAAAAATTCTTCACCTCCAGCTAATGGGGTTTAG
AA sequence Show only first row Show all	>Potri.015G140500.2 pacid=42775739 polypeptide=Potri.015G140500.2.p locus=Potri.015G140500 ID=Potri.015G140500.2.v4.1 annot-version=v4.1 MKGVKWNEDNLGEIEANKPVRQKITEPKTPYHPMIDVDDDSLSPRGGSFNEVIEDAMRAEDLRSALDIMASSSRNPAKRSSGWTSSEDEADPMEQDEEDS ETDRSSSFRELRRAHYDEFRKVKELRRKGSFLEDEDDEENGAEKEGTSSLTAGVRDIEIEEGAATSHKNSSPPANGV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Potri.015G140500 [exp]	0	1
AT5G55850		NOI	RPM1-interacting protein 4 (RI...		Potri.011G094200 [exp]	7.87	0.7222
AT3G55380		UBC14	ubiquitin-conjugating enzyme 1...		Potri.008G053900 [exp]	9.32	0.7225	Pt-UBC7.1
AT1G71696		SOL1.4, SOL1.3,...	SUPPRESSOR OF LLP1 1, carboxyp...		Potri.005G197000 [exp]	13.56	0.6446	SOL1.1
AT3G22942		AtGG2, AGG2	G-protein gamma subunit 2 (.1)		Potri.015G142500 [exp]	26.26	0.6825	Pt-AGG2.1
AT3G02920		ATRPA32B	Replication protein A, subunit...		Potri.018G091700 [exp]	31.74	0.6235
AT2G25910			3'-5' exonuclease domain-conta...		Potri.018G058900 [exp]	39.42	0.6454
AT5G05950		MEE60	maternal effect embryo arrest ...		Potri.010G196100 [exp]	47.40	0.5739
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.001G006300 [exp]	48.47	0.6632
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.015G085700 [exp]	56.32	0.6376
AT5G19070			SNARE associated Golgi protein...		Potri.008G202600 [exp]	58.48	0.6474

Compare expression of checked genes

Potri.015G140500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.