Plant FIBer expression Database

Potri.015G140600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52190 283 / 4e-98 Sugar isomerase (SIS) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014993
[exp]
286 / 4e-99 AT5G52190 272 / 9e-94 Sugar isomerase (SIS) family protein (.1)
Lus10038873
[exp]
186 / 1e-60 AT5G52190 163 / 1e-51 Sugar isomerase (SIS) family protein (.1)
PFAM info
Representative CDS sequence
>Potri.015G140600.1 pacid=42775919 polypeptide=Potri.015G140600.1.p locus=Potri.015G140600 ID=Potri.015G140600.1.v4.1 annot-version=v4.1
ATGGGGACCGAAACCCCTTCAATGTCCTCTCTAGCCTCACGAATATGCAATCACATGGCCTCCATCTTTGCCAAACCCACTGGCCCCCACCCACCACCCT
TGGACCTCATGATCACCACTCTCACTTCCACGGCAGCCCAAAATGGTCGTGTCTTCCTCTATGGGGTTGGTAGGGAGGGCCTGATGCTCAAGGCTCTATG
CATGAGGCTGGCTCACCTTGGCATCTCTACCCACTTTGTCTTTGACATGACAACCCCACCAATCACTTCAAATGACCTCCTCATAGCCTCTGCTGGACCT
GGAGGATTCTCTACTGTTGATGCTTTATGCTCACTCGCAAGATCGTACGGTGCTACAGTGTTGTTGTTGACGGCTCAGCCTGAGACAGGATCCTGTGTGA
AGCATGCTAGTGTGGTTTGCTATGTGCCAGCACAGACCATGGCTGATGATAAGGGTGATGGCGATGGCGGGGAGGAGAAATCTAGGCCTTTAATGCCTAT
GGGAAGTGTTTTTGAGGGGGCCTTGTTTGTGTTCTTTGAGATGGTTGTTTACAAGTTAGGTGAGGCTTTAGGACAGAGCCCTGAGGTCATTCGATCTCGC
CATACCAACCTTGAATGA
AA sequence
>Potri.015G140600.1 pacid=42775919 polypeptide=Potri.015G140600.1.p locus=Potri.015G140600 ID=Potri.015G140600.1.v4.1 annot-version=v4.1
MGTETPSMSSLASRICNHMASIFAKPTGPHPPPLDLMITTLTSTAAQNGRVFLYGVGREGLMLKALCMRLAHLGISTHFVFDMTTPPITSNDLLIASAGP
GGFSTVDALCSLARSYGATVLLLTAQPETGSCVKHASVVCYVPAQTMADDKGDGDGGEEKSRPLMPMGSVFEGALFVFFEMVVYKLGEALGQSPEVIRSR
HTNLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52190 Sugar isomerase (SIS) family p... Potri.015G140600
[exp]
0 1
AT5G58260 NdhN NADH dehydrogenase-like comple... Potri.013G160600
[exp]
1.41 0.9830
AT5G08050 Protein of unknown function (D... Potri.015G058600
[exp]
2.44 0.9812
AT1G42550 PMI1 plastid movement impaired1 (.1... Potri.005G255500
[exp]
5.19 0.9651
AT2G24820 AtTic55, TIC55-... translocon at the inner envelo... Potri.018G015700
[exp]
5.65 0.9642
AT1G75460 ATP-dependent protease La (LON... Potri.005G232800
[exp]
6.32 0.9587
AT2G03760 AtSOT12, AtSOT1... ARABIDOPSIS THALIANA SULFOTRAN... Potri.003G188933
[exp]
7.74 0.9419
AT1G34000 OHP2 one-helix protein 2 (.1) Potri.002G065000
[exp]
8.06 0.9639 Lil6_1,OHP2.2
AT4G27360 Dynein light chain type 1 fami... Potri.011G126400
[exp]
9.00 0.9427
AT5G49730 ATFRO6, FRO6 ferric reduction oxidase 6 (.1... Potri.001G079000
[exp]
9.79 0.9557
AT2G32480 ARASP ARABIDOPSIS SERIN PROTEASE (.1... Potri.014G154000
[exp]
12.00 0.9638

Potri.015G140600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.