Plant FIBer expression Database

Potri.015G140800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005752
[exp]
81 / 4e-20 ND /
Lus10027443
[exp]
77 / 1e-18 ND /
PFAM info
Representative CDS sequence
>Potri.015G140800.1 pacid=42776186 polypeptide=Potri.015G140800.1.p locus=Potri.015G140800 ID=Potri.015G140800.1.v4.1 annot-version=v4.1
ATGGACCCTAACATCTCCAACAACAGCAACAAAAGCAACAAAACTGAACATAACTGGACAAACGAGGAACACCTGCACTTCTTGCAATCAATGGAGGCAT
CGTTTGTCCGTACAATGCTTGAAAACAATGGCCCTCTCCTTCGTCTGGACCGGTACTTGCCGGACAGTTCAGAGTCAACTCTTGATTTGAAATCTCAGAG
AAAGAAGAAACATGGCACCCCAGATGTTGTTGGTGCATCAAGAACAAGAATGGAGGGTAGAGTTGATAAGAGATCAACAAGGAGATTTTCTTCCCACCAT
AAGCATTATGATCCTTCACAAGATCAGGTGGTCCCACAGGCTGATATCAGAACGAATGACAAAGATGAAAGAGACCTTCCTAATGTAGCAGTTGCACCGC
CACCCATGGCTCCAGCCAGCTGA
AA sequence
>Potri.015G140800.1 pacid=42776186 polypeptide=Potri.015G140800.1.p locus=Potri.015G140800 ID=Potri.015G140800.1.v4.1 annot-version=v4.1
MDPNISNNSNKSNKTEHNWTNEEHLHFLQSMEASFVRTMLENNGPLLRLDRYLPDSSESTLDLKSQRKKKHGTPDVVGASRTRMEGRVDKRSTRRFSSHH
KHYDPSQDQVVPQADIRTNDKDERDLPNVAVAPPPMAPAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G140800
[exp]
0 1
AT4G27290 S-locus lectin protein kinase ... Potri.011G129350
[exp]
1.00 0.9659
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.012G009200
[exp]
3.16 0.9230
AT1G18140 LAC1, ATLAC1 laccase 1 (.1) Potri.015G040600
[exp]
6.63 0.9288
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.012G028366
[exp]
6.63 0.9181
AT3G44350 NAC ANAC061 NAC domain containing protein ... Potri.009G019200
[exp]
9.53 0.9193
AT5G47080 CKB1 casein kinase II beta chain 1... Potri.001G149600
[exp]
9.69 0.8875
AT2G25410 RING/U-box superfamily protein... Potri.003G080200
[exp]
10.39 0.9251
AT1G06760 winged-helix DNA-binding trans... Potri.005G219800
[exp]
12.96 0.9172 HON904
AT1G05200 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) Potri.002G230000
[exp]
15.49 0.9187 Pt-GLUR3.3
AT1G04780 Ankyrin repeat family protein ... Potri.001G051400
[exp]
17.74 0.8624

Potri.015G140800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.