Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62020 234 / 3e-76 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT4G11660 213 / 7e-67 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT1G46264 171 / 7e-51 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G36990 163 / 1e-48 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT2G41690 159 / 1e-47 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT1G32330 154 / 2e-43 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 147 / 8e-41 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G03720 145 / 2e-40 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT3G22830 141 / 3e-39 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G02990 139 / 5e-38 HSF ATHSFA1E heat shock transcription factor A1E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138900 [exp] 363 / 9e-127 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.001G108100 [exp] 226 / 1e-72 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.007G043800 [exp] 176 / 1e-53 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.016G056500 [exp] 174 / 1e-53 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.001G273700 [exp] 170 / 1e-51 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.002G124800 [exp] 172 / 2e-51 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.014G027100 [exp] 172 / 2e-51 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 166 / 3e-50 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G138900 [exp] 151 / 4e-42 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014994 [exp] 258 / 2e-85 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10008007 [exp] 230 / 1e-73 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 220 / 3e-69 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10038874 [exp] 175 / 2e-53 AT4G11660 192 / 4e-60 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10019348 [exp] 174 / 7e-53 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10042646 [exp] 170 / 5e-50 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10009351 [exp] 166 / 1e-49 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10001133 [exp] 168 / 3e-49 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10011185 [exp] 145 / 7e-43 AT5G62020 143 / 7e-42 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10000312 [exp] 152 / 1e-42 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.015G141100.1 pacid=42775239 polypeptide=Potri.015G141100.1.p locus=Potri.015G141100 ID=Potri.015G141100.1.v4.1 annot-version=v4.1 ATGGCGTCACCGTTACCGGTGGAGCAAAACAGCGGGGAAACTCCACCATCCCCACTAGCAGCAGCAGCTGGAGGAGAAACATCAAGATCAATACCAACAC CATTTCTGACAAAAACATTTAAAATAGTAGATGATCACACCATTGACGATGTGATTTCATGGAATGAAGATGGTTCCTCTTTTGTAGTCTGGAATCCAAC CCTTTTCTCCAGAGATTTGCTCCCTAAATTCTTTAAGCACAACAATTTCTCTAGCTTCGTTCGCCAATTAAATACTTATGGATTTAGGAAGGTAGTACCG GATCGATGGGAGTTTTCGAATGAATGTTTTCGCAAAGGAGAAAAGAATTTGCTGTGTGAAATACAAAGGAGGAAACTGGTGGCGACGGTGGCGCAAGTGG TGGCAGCACCGGCGGCGGTGAAAGTGATAAAAACGTCGTCGAATTCTTCATCGGATGAGCAAGTAGTGATATCGACGAGGAGTTCTTCGCCGGGGTTGTC ATTGGAGTTGTTGGATGAGAATGAGAGGTTGAGGAAGGAGAATGTGCGGTTAAAAGGGGAGTTGACGGAGATGAAGAGTTTGTGTGGTAATATTTTTAGT TTGGTGTCGGATTTTGAGAGTTTGCGAGAGGAGGAGGAGGAGGAGGTGAGGAAGGTGTTGGATTTGTTGCCGATGAAGGAGGAAGTGGGGGATGGAGCGA GGATTTTTGGGGTGGAGGTTGGTGTGAAAAGAGGGAGGGAATTAAGTGGGGATATGGAGGTGGAGGAGGATGGGATGCAATTGCGGTTGCGGCAACCGGG TGGCGGCAGTAGTGATGGGGTGAAGATTGAGGTGAATGGTAGTCGAAATGGAGATAGATAG
AA sequence Show only first row Show all	>Potri.015G141100.1 pacid=42775239 polypeptide=Potri.015G141100.1.p locus=Potri.015G141100 ID=Potri.015G141100.1.v4.1 annot-version=v4.1 MASPLPVEQNSGETPPSPLAAAAGGETSRSIPTPFLTKTFKIVDDHTIDDVISWNEDGSSFVVWNPTLFSRDLLPKFFKHNNFSSFVRQLNTYGFRKVVP DRWEFSNECFRKGEKNLLCEIQRRKLVATVAQVVAAPAAVKVIKTSSNSSSDEQVVISTRSSSPGLSLELLDENERLRKENVRLKGELTEMKSLCGNIFS LVSDFESLREEEEEEVRKVLDLLPMKEEVGDGARIFGVEVGVKRGRELSGDMEVEEDGMQLRLRQPGGGSSDGVKIEVNGSRNGDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.015G141100 [exp]	0	1
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.011G123500 [exp]	5.00	0.7896	NAC003,ATNAC2.1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013000 [exp]	5.19	0.8221
AT5G38210			Protein kinase family protein ...		Potri.004G096550 [exp]	8.12	0.7715
AT3G59670			unknown protein		Potri.005G144800 [exp]	10.19	0.7978
AT5G40240			nodulin MtN21 /EamA-like trans...		Potri.015G073200 [exp]	13.41	0.7568
AT5G17510			unknown protein		Potri.013G076800 [exp]	20.78	0.7848
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.009G129600 [exp]	21.90	0.7780
AT5G63520			unknown protein		Potri.015G098700 [exp]	27.11	0.7533
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.004G090766 [exp]	28.14	0.7704
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Potri.002G026700 [exp]	31.11	0.6923

Compare expression of checked genes

Potri.015G141100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.