Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EMS1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07280 1346 / 0 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 562 / 1e-178 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 531 / 4e-167 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G55610 529 / 7e-167 BRL1 BRI1 like (.1.2) AT3G13380 528 / 9e-167 BRL3 BRI1-like 3 (.1) AT2G01950 525 / 1e-165 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT2G33170 517 / 7e-163 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G39400 518 / 2e-162 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 493 / 4e-154 Leucine-rich receptor-like protein kinase family protein (.1) AT2G02220 484 / 6e-152 ATPSKR1 phytosulfokin receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G139000 [exp] 2167 / 0 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G101100 [exp] 554 / 7e-177 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.001G075000 [exp] 545 / 7e-172 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G140500 [exp] 540 / 3e-171 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.011G169600 [exp] 541 / 9e-171 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.003G156200 [exp] 537 / 4e-169 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.019G120700 [exp] 530 / 3e-166 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 530 / 3e-166 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.007G078100 [exp] 519 / 6e-163 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038875 [exp] 1403 / 0 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 1377 / 0 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10036251 [exp] 546 / 2e-172 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10033533 [exp] 526 / 1e-165 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 519 / 8e-163 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 508 / 4e-159 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038392 [exp] 508 / 2e-158 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10039132 [exp] 504 / 7e-158 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10006817 [exp] 501 / 2e-156 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 493 / 2e-153 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G141200.1 pacid=42776478 polypeptide=Potri.015G141200.1.p locus=Potri.015G141200 ID=Potri.015G141200.1.v4.1 annot-version=v4.1 ATGGCAATGTCTTTCAAGCTTGTGTTTTTTTGCTTTCTAGTGTTAACAAAGCCTCTCATTTTGGTTTCAAAGTACACTGAAGATCAAAATACAGATAGGG AATCTCTCATTTCCTTCAAAAATGCACTCAGAAACCCAAAGATCCTTTCTTCATGGAACATAACTAGTCGTCACTGCAGCTGGGTTGGCGTTTCTTGCCA TCTCGGCCGTGTTGTTTCCTTGATACTCTCAACTCAGAGCCTTCGAGGCCGACTCCACCCTTCTCTTTTCTCCCTTTCTTCCTTAACCATTCTTGATTTG TCCTATAACCTTTTTGTTGGCGAAATCCCACATCAAGTTTCCAATCTTAAACGCTTGAAACACCTTTCTCTGGGTGGTAACCTGCTATCAGGGGAGTTGC CACGTGAACTCGGTGTGCTGACTCGGCTCCAAACCCTACAACTCGGTCCCAACTCGTTCACAGGGAAAATCCCACCGGAGGTTGGGAAGTTGTCCCAGCT GAACACCCTTGACCTCTCAAGCAATGGGCTCACTGGGTCAGTGCCGAGTCAACTTAGTGAGTTGACCGGGCTTCAGTTCTTGGACCTTGGTAACAACCTT CTATCAGGTTCTCCTGTAAATCTCTTTAAACTTGAATCCTTGAAATCATTGGATATATCAAACAATTCCTTTTCTGGTCCCATTCCACCTGAAATAGGCA ACCTTAAGAACCTGTCTGATCTTTACATCGGTATCAACTTGTTTTCTGGTCCTTTTCCACCAGAAATTGGTGACCTTTCAAGACTTGAAAACTTCTTTGC ACCTTCATGTTCAATCACAGGTCCTTTTCCTGAAGAAATTTCCAATTTGAAGTCATTGAATAAACTTGACCTTTCTTATAATCCATTGAGGTGTTCAATA CCGAAGTCTGTAGGCGCAATGGAGAGCTTGTCAATTTTGAATCTTGTTTACTCTGAGCTTAATGGTTCTATACCTGCTGAACTTGGAAATTGCAAAAATT TGAAGACTGTGATGTTGTCTTTCAATTCTCTGTCTGGAGTGTTACCAGAAGAGCTTTCTATGTTGCCTATGTTGACATTTTCTGCTGATAAGAATCAGCT TTCAGGGCCATTGCCTCATTGGCTTGGAAAGTGGAACCAGGTGGAGTCACTTTTGCTTTCAAATAATAGGTTTTCAGGGAAAATACCACCTGAAATTGGG AATTGTTCGGCGTTGAGGGTGATTAGTTTGAGTAGTAACTTGCTGAGTGGGGAGATACCAAGAGAGCTTTGTAAGGCAGTTGATCTTATGGAGATTGATC TTGACGTGAATTTCCTGACTGGTGGTATTGAGGATGTGTTCTTGAAGTGTACTAATTTGAGCCAGTTGGTTTTGATGGATAATCAGATTGACGGCTCGAT TCCGGAGTATTTAGCAGGGCTTCCTTTGACGGTGCTTGATCTTGATTCTAACAATTTCACGGGTACCATACCTGTGAGTTTGTGGAACTCCATGACCTTG ATGGAATTCTCCGCTGCAAATAATTTGTTAGAGGGTTCTCTGCCCGTGGAGATTGGCAATGCTGTTCAGCTGGAGAGGCTGGTGCTGAGTAACAATCAGC TAGGGGGTACTATCCCGAAGGAGATTGGCAATCTCACAGCTCTTTCAGTTCTCAACTTGAACTCCAATCTGTTGGAAGGAACCATTCCTGTGGAGCTCGG ACACTCAGCTGCACTTACCACGTTGGACCTAGGAAATAATCAACTCTCTGGTTCAATACCGGAGAAACTTGCAGATTTGGTTCAATTACATTGCTTGGTT CTTTCTCACAATAAGTTATCAGGGCCCATTCCATCGGAGCCTTCTTTGTATTTTCGTGAGGCTAGTATTCCTGATTCGAGCTTCTTTCAACACCTTGGTG TGTTTGATTTGTCACATAATATGTTGTCCGGTTCAATACCTGAGGAGATGGGGAACCTTATGGTTGTGGTGGATCTTCTTCTCAACAATAACAAGCTTTC CGGTGAAATTCCAGGGTCACTTTCAAGGTTGACAAATCTTACAACCTTGGATTTGTCTGGAAATATGCTAACCGGCTCCATTCCACCAGAACTTGGTGAC TCTTCCAAGCTTCAGGGCCTGTATTTGGGGAATAATCAACTCTCGGGAACCATCCCTGGGAGACTAGGTGTCTTAGGCAGCTTGGTGAAGCTGAATTTGA CTGGTAATCAGTTGTATGGTCCAGTTCCTCGTAGTTTTGGAGACTTGAAAGAGCTTACTCACTTGGATTTGAGCTATAACGAGCTTGATGGTGAGCTTCC TTCTTCTCTATCAGGAATGCTGAATCTTGTGGGGCTTTATGTCCAGAAGAACCGGCTATCTGGGTCTGTAGATGAGCTCTCATCTATGTCCATTGCATGG AAGATTGAAACAATGAATTTGAGTAATAATTTCTTTGATGGAGACTTGCCGCGATCATTTGGCAATCTTTCATACTTGACATATTTGGATCTTCATGGAA ATAAATTCACAGGAGGAATTCCTCTAGAGCTTGGGAATTTGGTGCAACTCGCATATTTTGATGTTTCAGGGAATAGGATATCAGGGCAAATTCCGGAGAA GTTATGTGCCCTGGTTAATCTGTTTTATTTGAATTTGGCAGAAAACAGTTTAGAAGGACCCGTACCAGGAAGTGGTATTTGCCTAAACCTGTCAAAAATC TCACTTGCTGGCAACAAAGACCTCTGTGGGAAAATCATGGGTTTAGATTGCAGGATCAAAAGCTTTGACAAGTCGTATTATTTGAATGCTTGGGGACTTG CTGGGATTGCAGTTGGATGTATGATTGTCACTCTTAGTATAGCCTTTGCTCTGCGAAAATGGATTTTGAAAGACAGTGGGCAAGGTGATCTTGATGAAAG AAAACTGAACAGTTTTCTTGATCAAAACTTGTACTTCTTGAGCAGCAGCAGCAGCAGATCGAAGGAGCCTCTGAGTATCAACATAGCCATGTTTGAGCAG CCTCTTCTGAAAATTACTTTAGTTGATATTCTAGAAGCCACCAACAACTTTTGCAAGACAAACATCATTGGAGATGGAGGTTTTGGTACTGTATATAAGG CCACTCTACCTGATGTAAAAACAGTTGCGGTCAAGAAGTTGAGTCAAGCCAAGACACAGGGCAACCGAGAATTCATTGCTGAAATGGAAACGTTGGGGAA GGTTAAGCATCAGAATCTTGTTCCGTTGCTGGGATATTGTTCTTTTGGGGAGGAAAAGCTCCTTGTTTATGAATACATGGTAAATGGGAGCTTAGATCTT TGGCTAAGAAATCAAAGCAGGGCTCTTGACGTCCTTGATTGGCCCAAGCGCGTCAAAATTGCAACAGGTGCTGCACGTGGGCTAGCTTTTCTCCACCATG GATTCACCCCCCACATTATCCACAGGGATATCAAAGCCAGCAACATCCTACTTAACGAGGATTTCGAGCCAAAGGTTGCTGATTTTGGGCTGGCCAGGTT GATCAGTGCTTGCGAGACTCATGTTAGCACGGACATAGCAGGAACATTTGGTTACATACCACCAGAGTATGGTCAGAGTGGGAGGTCTACTACAAGAGGA GATGTTTATAGCTTTGGTGTAATTCTGCTTGAATTGGTGACTGGGAAAGAGCCAACAGGACCGGATTTCAAAGAGGTTGAAGGTGGGAACCTAGTCGGTT GGGTGTTTCAAAAGATTAAGAAGGGTCAGGCTGCTGATGTTCTTGATCCAACAGTTCTTAGTGCAGATTCCAAGCAGATGATGCTTCAAGTGCTGCAGAT TGCTGCTATTTGCCTGTCTGATAATCCTGCAAATAGACCTACCATGCTCAAAGTGTTGAAGTTCCTGAAAGGGATCAAAGATGAGTAG
AA sequence Show only first row Show all	>Potri.015G141200.1 pacid=42776478 polypeptide=Potri.015G141200.1.p locus=Potri.015G141200 ID=Potri.015G141200.1.v4.1 annot-version=v4.1 MAMSFKLVFFCFLVLTKPLILVSKYTEDQNTDRESLISFKNALRNPKILSSWNITSRHCSWVGVSCHLGRVVSLILSTQSLRGRLHPSLFSLSSLTILDL SYNLFVGEIPHQVSNLKRLKHLSLGGNLLSGELPRELGVLTRLQTLQLGPNSFTGKIPPEVGKLSQLNTLDLSSNGLTGSVPSQLSELTGLQFLDLGNNL LSGSPVNLFKLESLKSLDISNNSFSGPIPPEIGNLKNLSDLYIGINLFSGPFPPEIGDLSRLENFFAPSCSITGPFPEEISNLKSLNKLDLSYNPLRCSI PKSVGAMESLSILNLVYSELNGSIPAELGNCKNLKTVMLSFNSLSGVLPEELSMLPMLTFSADKNQLSGPLPHWLGKWNQVESLLLSNNRFSGKIPPEIG NCSALRVISLSSNLLSGEIPRELCKAVDLMEIDLDVNFLTGGIEDVFLKCTNLSQLVLMDNQIDGSIPEYLAGLPLTVLDLDSNNFTGTIPVSLWNSMTL MEFSAANNLLEGSLPVEIGNAVQLERLVLSNNQLGGTIPKEIGNLTALSVLNLNSNLLEGTIPVELGHSAALTTLDLGNNQLSGSIPEKLADLVQLHCLV LSHNKLSGPIPSEPSLYFREASIPDSSFFQHLGVFDLSHNMLSGSIPEEMGNLMVVVDLLLNNNKLSGEIPGSLSRLTNLTTLDLSGNMLTGSIPPELGD SSKLQGLYLGNNQLSGTIPGRLGVLGSLVKLNLTGNQLYGPVPRSFGDLKELTHLDLSYNELDGELPSSLSGMLNLVGLYVQKNRLSGSVDELSSMSIAW KIETMNLSNNFFDGDLPRSFGNLSYLTYLDLHGNKFTGGIPLELGNLVQLAYFDVSGNRISGQIPEKLCALVNLFYLNLAENSLEGPVPGSGICLNLSKI SLAGNKDLCGKIMGLDCRIKSFDKSYYLNAWGLAGIAVGCMIVTLSIAFALRKWILKDSGQGDLDERKLNSFLDQNLYFLSSSSSRSKEPLSINIAMFEQ PLLKITLVDILEATNNFCKTNIIGDGGFGTVYKATLPDVKTVAVKKLSQAKTQGNREFIAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDL WLRNQSRALDVLDWPKRVKIATGAARGLAFLHHGFTPHIIHRDIKASNILLNEDFEPKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRG DVYSFGVILLELVTGKEPTGPDFKEVEGGNLVGWVFQKIKKGQAADVLDPTVLSADSKQMMLQVLQIAAICLSDNPANRPTMLKVLKFLKGIKDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Potri.015G141200 [exp]	0	1	Pt-EMS1.1
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.005G234200 [exp]	1.00	0.9085
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	2.44	0.8870
AT5G06270			unknown protein		Potri.006G206000 [exp]	2.44	0.8838
					Potri.001G041550 [exp]	4.12	0.8253
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	6.32	0.8528
AT2G23440			unknown protein		Potri.007G041400 [exp]	8.83	0.8514
AT5G57420	AUX_IAA	IAA33	indole-3-acetic acid inducible...		Potri.006G166900 [exp]	8.94	0.8470
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	10.95	0.8507
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.013G149000 [exp]	12.48	0.8391
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	18.13	0.8508

Compare expression of checked genes

Potri.015G141200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.