Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33495 608 / 0 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 238 / 1e-73 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G06440 224 / 1e-68 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 156 / 8e-43 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 149 / 3e-39 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 142 / 3e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 140 / 4e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G48040 139 / 2e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 135 / 2e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 135 / 6e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G030300 [exp] 243 / 3e-75 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G245100 [exp] 239 / 1e-74 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G244900 [exp] 204 / 2e-61 AT1G06440 503 / 7e-180 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 155 / 2e-42 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 157 / 3e-42 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 148 / 5e-40 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 149 / 3e-39 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 146 / 6e-39 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 140 / 7e-37 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005755 [exp] 631 / 0 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027440 [exp] 629 / 0 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10041673 [exp] 219 / 4e-66 AT1G06440 495 / 2e-175 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 149 / 7e-40 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 149 / 3e-39 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 148 / 4e-39 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10003062 [exp] 144 / 2e-38 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10034086 [exp] 140 / 5e-37 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000096 [exp] 137 / 1e-35 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 135 / 4e-35 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [poplar] [flax] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Potri.015G141700.4 pacid=42775606 polypeptide=Potri.015G141700.4.p locus=Potri.015G141700 ID=Potri.015G141700.4.v4.1 annot-version=v4.1 ATGCTAGTCTTCATTTCTCTCGGTCTCTTAAACCCTAGACTCAAACCCCTCAAAACTCTTCAATCCACACTCTACAACCTTAAACACACAAAACCCATGT CCCAATCCACTTCAATACCCAAAAAACAACTAAGGGTTCGTGACCATGGATTCGATAATTACATGGAAATTGAAAAAAAGACGAGAAAGGTCTTAAAGTT TCAATCTTTAATACTTTCTCAGTACAACCAAACACTGCCCATTTCACGTCTTGACAATCTCGCTGGCAGGTTGGGGTTTAAACAGTTTGAAGCTGGTGCC TTTATCCTCAAATTCCCTCATGTTTTTGAGGTCTATGAGCACCCAGTTCAACGAGTGTTGTACTGTCGCTTAACGCGCAAAGCAGTCAATCAGATTATGC AAGAAAAGGAGGCCCTTTTGGCTCAAATCCCTGATGCTGTTACCAGATTGAGGAAATTGATAATGATGTCTAATGAGGGTCGGTTGCGGTTAGAGCATGT AAGGATCGCAAGGTACGAGTTTGGTTTACCTGATGATTTTGAGTATTCTGTTGTTTTGAAGTATCCGCAGTTTTTTAGATTGGTTGATGCTAGTGAGACT AGGAATAAGTACATTGAGGTGGTTGACAGAGACCGTAGATTGACGGTTTGTGCGATAGAAAAAGTCAGGGAGAGAGAGTATAGAGAGAAAGGAATGGATG CTGAGGACGTGAGGTTTAAGTTTATGGTGAATTTCCCACCGGGGTTTAAGATAGGGAAGTATTATAGGATTGCAGTGTGGAAATGGCAAAGGGTACCTTA TTGGTCACCGTATGAAGATATTTCAGGTTATGATTTGAGGTCAATTGAAGCTCAGAAGAGGATGGAGAAGAGGGCAGTGGCTACTATTCATGAATTGTTG TCGTTGACGGTGGAGAAGAAGATTACAATGGAGAGGATCGCCCATTTCAGGATGGCTATGAATTTACCCAACAAATTGAAGGGCTTTTTGCTTCAGCATC AGGAGATTTTCTATGTTTCGACTAGAGGGAATCATGGGAAGCTTCATACAGTTTTTCTTCGAGAGGCTTATAGGAAAGGGGAGTTAGTTGAGCCGAATGG TTTGTATTTGGCAAGGAGGAAGTTGTGTGAGTTGGTGTTGACGAGTTCGAGGAAAGCAAATGTGGATAGGGGGTTGGTTCATTATAGGGGGGATAGAGAA GATGATGAGATGGAGCGTTTTAGGAGAGACTGCTCAGAAGATGGTTTTGAGGGTGGGAAGGAGGGGAAAGATGGAGAGAGGGAGGATGATTTGAACTTGG ACTTGAGTTGTGATGTTGGTTCTGATTGTACAGATGAGGATGATGATGTTGATGGCATCGAAAAGGCAGAGAAGGCTCAACTAAATGGGTGA
AA sequence Show only first row Show all	>Potri.015G141700.4 pacid=42775606 polypeptide=Potri.015G141700.4.p locus=Potri.015G141700 ID=Potri.015G141700.4.v4.1 annot-version=v4.1 MLVFISLGLLNPRLKPLKTLQSTLYNLKHTKPMSQSTSIPKKQLRVRDHGFDNYMEIEKKTRKVLKFQSLILSQYNQTLPISRLDNLAGRLGFKQFEAGA FILKFPHVFEVYEHPVQRVLYCRLTRKAVNQIMQEKEALLAQIPDAVTRLRKLIMMSNEGRLRLEHVRIARYEFGLPDDFEYSVVLKYPQFFRLVDASET RNKYIEVVDRDRRLTVCAIEKVREREYREKGMDAEDVRFKFMVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDISGYDLRSIEAQKRMEKRAVATIHELL SLTVEKKITMERIAHFRMAMNLPNKLKGFLLQHQEIFYVSTRGNHGKLHTVFLREAYRKGELVEPNGLYLARRKLCELVLTSSRKANVDRGLVHYRGDRE DDEMERFRRDCSEDGFEGGKEGKDGEREDDLNLDLSCDVGSDCTDEDDDVDGIEKAEKAQLNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Potri.015G141700 [exp]	0	1
AT1G19290			Pentatricopeptide repeat (PPR)...		Potri.014G040200 [exp]	1.00	0.9054
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	4.00	0.9030
AT5G65540			unknown protein		Potri.007G011800 [exp]	6.16	0.8335
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	7.21	0.8812
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.017G047600 [exp]	8.36	0.8807
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Potri.002G178200 [exp]	10.77	0.8189
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.015G089000 [exp]	12.84	0.8364
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	16.09	0.8736	Pt-RPB1.1
AT2G15980			Tetratricopeptide repeat (TPR)...		Potri.004G149400 [exp]	16.37	0.8126
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	17.32	0.8241

Compare expression of checked genes

Potri.015G141700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.