Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00730 828 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 802 / 0 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G04890 700 / 0 HD PDF2 protodermal factor 2 (.1) AT5G52170 699 / 0 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G21750 683 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 675 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G73360 560 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 530 / 8e-180 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G79840 507 / 5e-170 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT2G32370 497 / 3e-166 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G139300 [exp] 1335 / 0 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 954 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 925 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 706 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G152000 [exp] 704 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 676 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 662 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 596 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G038500 [exp] 570 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036567 [exp] 803 / 0 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 771 / 0 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 753 / 0 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10006765 [exp] 685 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 670 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 666 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10027175 [exp] 647 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10039667 [exp] 645 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10031321 [exp] 615 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10014997 [exp] 575 / 0 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.015G141800.1 pacid=42775843 polypeptide=Potri.015G141800.1.p locus=Potri.015G141800 ID=Potri.015G141800.1.v4.1 annot-version=v4.1 ATGCCTAAGAATAAGATGGATAGTCATGGTGACATGGGCCTACTTGGGGAACATTTTGATCCTAGTTTGGTAGGGAGGATGAGGGAGGATGGTTATGAGA GCAGGTCTGGAAGTGATAACATTGAAGGTGCATCTGGGGAAGATCAGGATGCTGGAGATTATCAAAGGCCTAGGAAGAAGTACAATAGACACACTGCTAA TCAAATACAAGAGCTTGAATCTTTCTTTAAGGAATGTCCTCATCCTGATGAAAAACAAAGATCAGAGCTTAGCAGGAGGCTTGGCTTGGAAAGCAAGCAA ATCAAGTTTTGGTTTCAAAATAGGAGAACTCAAATGAAGACCCAGTTGGAACGGCATGAGAATGCAATCCTCAGGCAAGAAAATGATAAACTCCGAGCTG AGAATGAGTTGTTGAAACAAAACATGAGTGATCCAATTTGCAACAATTGTGGTGGTCCTGTGGTGCCTGTTCCAGTGTCTTATGAGCAGCAGCAGTTAAG AATTGAAAATGCTCGATTGAAGGATGAATTAGGCCGTGTTTGTGCCCTAGCCAATAAGTTTTTAGGCAGACCTCTCACATCCTCGGCCAGTCCTGTCCCT CCCTTTGGCTCAAACACCAAGTTCGACCTTGCAGTTGGGAGAAATGGTTATGGCAATTTAGGCCATACAGACAACACGTTGCCAATGGGGCTTGACAATA ATGGAGGGGTTATGATGCCTCTGATGAAACCAATAGGCAATGCTGTTGGCAATGAAGTACCATTTGATAGATCAATGTTTGTAGATCTTGCACTGGCTGC TATGGATGAATTGATTAAGATTGCTCAGGTTGAAAGTCCCATTTGGATCAAAAGCTTGGATGGAGGGAAGGAAGTCCTGAACCATGAAGAGTATATGAGG ACTTTTCCTCCTTGTATTGGCATGAAACCCAGCAATTTTGTTATCGAGGCAACTCGGGAGAGTGGTGTAGTACTCGCCAACAGCTTGGATCTGGTTGAGA CATTGATGGACGTGAATGGATGGGTGGAAATGTTTCCCAGCTTGATTGCTAGAGCTGCGACCATTGATATCGTATCAAGTGGCATGGGCGGAACAAAAAG TGGAGCTTTGCAAATGATACATGCTGAATTTCAAGTGATTTCTCCTTTTGTCCCTGTGCGTCAAGTGAAGTTCCTTCGGTTATGCAAGCAACTAGCAGAG GGTGTGTGGGCTGTGGCTGATGTTTCTGTTGATGGAAACCAGGAAAATCTAAATGCACAAACCCCTGTAACCTGCAGAAGGCTTCCTTCTGGCTGCATAA TACAAGATATGAACAATGGTTGCTGCAAGGTTACATGGGTGGAACATTCTGAATATGATGAGAGTGCAGTCCATCGACTCTACCGACACATACTAAATTC TGGCATGGGCTTTGGTGCACAGAGGTGGATTGCCGCCCTTCAACGGCACTACGAGTGCATGGCAATGCTCTTGTCCCCTACCATTTTGGGTGAAGATCAG ACAGTGATAAATCTGGGAGGTAAGAAAAGCATGTTAAAGTTGGCACGACGAATGGTGGATAGCTTCTGTTCTGGGGTCTGTGCTTCTACTTTGCATAACT GGGGCAACCTTGTGGTTGAAAGTGTGAGTGAAGATGTGAGGATTTTGACCCGAAAGATTATCAATGAACCTGGTGAGCCAGATGGTATTGTGCTGAGTGT TTCAACTTCTGTTTGGCTGCCGGTTTCACAACAAAGGTTATTTGACTTTTTGAGGGATGAACAATCAAGGAGCCAATGGGACATTTTATCCAATGGTGGA ATATTGCAGGAGATGGTCCAAATCCCCAAGGGCCAGGGACATTGGAACACTGTCTCTGTCTTGCGTTCAACTGCTGTTGATGCTAACGCGAGTGACAACA TGTTGATATTGCAAGAAACCTGGAATGATGTCTCGGGTTCGTTAGTAGTGTACGCACCAGTCGACGTACAATCAGTGAGTGTAGTGATGAATGGTGGAGA CTCTACCTATGTGGCTCTCTTGCCATCAGGATTTGTGATTCTTCCAGGCAATTCATTCAGTAATGGTGAGCCAAACAACTGCAATGGGAATCCAGCTAAG AGAGACTGTGATGGCAACAGTGGAGGCGGATCTTTTTTGACTGTTGGATTCCAAATTTTGGCGAGCAACCTTCCTTCAGCCAAACTCACAGTCGAGTCAG TCAAGACAGTTCACAATCTTATCTCCTGCACCATGCAGAGGATCAAAACAGCCTTCAACTAA
AA sequence Show only first row Show all	>Potri.015G141800.1 pacid=42775843 polypeptide=Potri.015G141800.1.p locus=Potri.015G141800 ID=Potri.015G141800.1.v4.1 annot-version=v4.1 MPKNKMDSHGDMGLLGEHFDPSLVGRMREDGYESRSGSDNIEGASGEDQDAGDYQRPRKKYNRHTANQIQELESFFKECPHPDEKQRSELSRRLGLESKQ IKFWFQNRRTQMKTQLERHENAILRQENDKLRAENELLKQNMSDPICNNCGGPVVPVPVSYEQQQLRIENARLKDELGRVCALANKFLGRPLTSSASPVP PFGSNTKFDLAVGRNGYGNLGHTDNTLPMGLDNNGGVMMPLMKPIGNAVGNEVPFDRSMFVDLALAAMDELIKIAQVESPIWIKSLDGGKEVLNHEEYMR TFPPCIGMKPSNFVIEATRESGVVLANSLDLVETLMDVNGWVEMFPSLIARAATIDIVSSGMGGTKSGALQMIHAEFQVISPFVPVRQVKFLRLCKQLAE GVWAVADVSVDGNQENLNAQTPVTCRRLPSGCIIQDMNNGCCKVTWVEHSEYDESAVHRLYRHILNSGMGFGAQRWIAALQRHYECMAMLLSPTILGEDQ TVINLGGKKSMLKLARRMVDSFCSGVCASTLHNWGNLVVESVSEDVRILTRKIINEPGEPDGIVLSVSTSVWLPVSQQRLFDFLRDEQSRSQWDILSNGG ILQEMVQIPKGQGHWNTVSVLRSTAVDANASDNMLILQETWNDVSGSLVVYAPVDVQSVSVVMNGGDSTYVALLPSGFVILPGNSFSNGEPNNCNGNPAK RDCDGNSGGGSFLTVGFQILASNLPSAKLTVESVKTVHNLISCTMQRIKTAFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.015G141800 [exp]	0	1
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.002G227500 [exp]	1.41	0.8442
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.001G012700 [exp]	5.47	0.8254	Pt-FAD2.1
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232301 [exp]	6.00	0.8261
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048800 [exp]	8.36	0.7972
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Potri.006G129300 [exp]	8.66	0.8273
AT4G16447			unknown protein		Potri.006G016500 [exp]	12.32	0.7477
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G084700 [exp]	18.97	0.8076
AT1G59580		ATMPK2	mitogen-activated protein kina...		Potri.005G231100 [exp]	21.16	0.7536	Pt-MPK1.3
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	22.51	0.8023
AT1G50110			D-aminoacid aminotransferase-l...		Potri.009G082600 [exp]	27.49	0.7833

Compare expression of checked genes

Potri.015G141800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.