Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07250 294 / 2e-98 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT2G29050 262 / 2e-85 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G63120 256 / 7e-84 ATRBL2 RHOMBOID-like 2 (.1) AT1G12750 236 / 5e-76 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT3G53780 232 / 1e-73 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT4G23070 204 / 8e-64 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G77860 159 / 1e-45 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT1G52580 145 / 5e-41 ATRBL5 RHOMBOID-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G139600 [exp] 410 / 4e-144 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.003G122900 [exp] 318 / 6e-108 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 308 / 3e-104 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.009G031900 [exp] 260 / 1e-84 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 259 / 2e-84 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 242 / 3e-77 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.002G090400 [exp] 140 / 4e-38 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Potri.006G197900 [exp] 42 / 0.0004 AT3G58460 561 / 0.0 RHOMBOID-like protein 15 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024497 [exp] 322 / 2e-109 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 311 / 3e-105 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10027436 [exp] 305 / 4e-102 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10023789 [exp] 251 / 6e-81 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 249 / 8e-77 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10005464 [exp] 229 / 2e-72 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 228 / 5e-72 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10003743 [exp] 131 / 9e-35 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10028036 [exp] 129 / 7e-34 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.015G142000.1 pacid=42774916 polypeptide=Potri.015G142000.1.p locus=Potri.015G142000 ID=Potri.015G142000.1.v4.1 annot-version=v4.1 ATGTCAAGAGAAGACACAGAAAGAGGAGGGGGAGTTAAGAGCAGAGGAAACAACAGCAACAGCTACTTATCATCAACTTCAACATACCCGATAGAAGACA CAGAAGCTCATTACAGGACATCATGGCTTGTACCTATGTTCGTGGTGGCAAATGTTGCTGTCTTCATTGTTGTGATGTGCATCAATAATTGTCCTAAACA TTTACATAGAAGACTTGAAGGGAAGTGCGTTGCAAGGTTTCTTGGGAGGTTTTCTTTTGAGCCTTTGAAAGATAATCCTCTCTTTGGCCCCTCTTCTGCC ACACTGGAGAGGTTGGGAGCTCTTGAGTGGACCAAGGTTGTAGATAAGCACCAGGGATGGAGGCTTATCACTTGTATCTGGTTGCATGCTGGTATTATTC ATCTTCTTGCAAACATGCTGAGCCTGGTCTTCATTGGCATTCGTCTCGAGCAGCAATTTGGGTTTGTTCGCATTGGAGTTGTTTATCTGCTGTCAGGATT TGGCGGGAGTGTGCTTTCCTCTCTATTTATTAGAAACAATATCTCAGTTGGAGCCTCAGGTGCCCTTTTCGGGCTTCTTGGAGCAATGCTCTCAGAGCTA ATTACAAACTGGAGTATCTATACCAACAAGGCTGCAGCTCTGCTTACACTACTGGTCATAATAGTCATTAACCTTGCAATAGGAATTCTGCCACATGTTG ATAATTTTGCCCATATTGGTGGATTTCTGTCAGGATTCCTCCTAGGCTTTGTTCTGCTTCCCCGTCCTCAGTATGGCTGGCTAGAGCGTGGAAATGTTCC CTCCGGTGTTGGTGTCAAATCCAAGTACAGGGCTCACCAATATGCTCTATGGCTGATTTCTGTGATTCTGCTGATTGTAGGATTCACAGTGGCATTGGTG ATGTTGTTCAAGGGAGAAAATGGAAACGATCATTGCCATTGGTGTCACTATCTCAGCTGTGTCCCTACTTCCAGATGGAAATGTAACGATAACAACCTTT AG
AA sequence Show only first row Show all	>Potri.015G142000.1 pacid=42774916 polypeptide=Potri.015G142000.1.p locus=Potri.015G142000 ID=Potri.015G142000.1.v4.1 annot-version=v4.1 MSREDTERGGGVKSRGNNSNSYLSSTSTYPIEDTEAHYRTSWLVPMFVVANVAVFIVVMCINNCPKHLHRRLEGKCVARFLGRFSFEPLKDNPLFGPSSA TLERLGALEWTKVVDKHQGWRLITCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFVRIGVVYLLSGFGGSVLSSLFIRNNISVGASGALFGLLGAMLSEL ITNWSIYTNKAAALLTLLVIIVINLAIGILPHVDNFAHIGGFLSGFLLGFVLLPRPQYGWLERGNVPSGVGVKSKYRAHQYALWLISVILLIVGFTVALV MLFKGENGNDHCHWCHYLSCVPTSRWKCNDNNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.015G142000 [exp]	0	1
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	1.41	0.9514	Pt-SAM1.1
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	2.44	0.9370
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	2.82	0.9418	Pt-4CL.3,Ptr4CL3
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	4.47	0.9298
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	6.92	0.9341	OMT1.1
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.009G074300 [exp]	7.34	0.9121
AT1G08760			Plant protein of unknown funct...		Potri.017G026200 [exp]	7.54	0.8911
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	8.77	0.9218	CAld5H/F5H4,Pt-FAH1.4
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.012G016200 [exp]	8.94	0.9214
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.002G233400 [exp]	10.39	0.9006	Pt-RIC2.2

Compare expression of checked genes

Potri.015G142000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.