Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07240 138 / 2e-36 IQD24 IQ-domain 24 (.1) AT5G62070 125 / 7e-32 IQD23 IQ-domain 23 (.1) AT4G23060 88 / 2e-18 IQD22 IQ-domain 22 (.1) AT3G16490 72 / 2e-13 IQD26 IQ-domain 26 (.1) AT4G00820 61 / 7e-10 IQD17 IQ-domain 17 (.1) AT4G14750 50 / 1e-06 IQD19 IQ-domain 19 (.1) AT3G52290 50 / 2e-06 IQD3 IQ-domain 3 (.1) AT1G01110 49 / 4e-06 IQD18 IQ-domain 18 (.1.2) AT5G03040 47 / 1e-05 IQD2 IQ-domain 2 (.1.2.3) AT3G59690 45 / 7e-05 IQD13 IQ-domain 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G139800 [exp] 617 / 0 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.001G108800 [exp] 195 / 8e-57 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.003G122800 [exp] 156 / 2e-42 AT4G23060 109 / 1e-25 IQ-domain 22 (.1) Potri.008G156700 [exp] 83 / 7e-17 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.001G190500 [exp] 78 / 2e-15 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.010G082600 [exp] 77 / 6e-15 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.002G178500 [exp] 74 / 7e-14 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.003G047800 [exp] 71 / 6e-13 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.001G448100 [exp] 69 / 3e-12 AT4G00820 288 / 2e-90 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005760 [exp] 285 / 1e-91 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10027435 [exp] 260 / 5e-82 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10017841 [exp] 119 / 4e-29 AT4G23060 258 / 2e-80 IQ-domain 22 (.1) Lus10024498 [exp] 113 / 1e-27 AT4G23060 195 / 4e-58 IQ-domain 22 (.1) Lus10011131 [exp] 61 / 6e-10 AT3G16490 223 / 2e-68 IQ-domain 26 (.1) Lus10006613 [exp] 52 / 7e-07 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 51 / 2e-06 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10036508 [exp] 50 / 3e-06 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 50 / 3e-06 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10014870 [exp] 50 / 3e-06 AT2G26180 249 / 5e-74 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.015G142200.1 pacid=42775806 polypeptide=Potri.015G142200.1.p locus=Potri.015G142200 ID=Potri.015G142200.1.v4.1 annot-version=v4.1 ATGGGTTTTTTCCGGCGACTTTTTGGTGCCAAGAAGAAGTCTAGATCTTCAAAAACAACACCCTCTTTGTCACAGTCCAAGAAGGTTGATCAAATTTTGT TATCAACTACTCCTTATGATGCTAATAATTTGGATGCTAATAAGCATGCAATAGCTGTGGCAGCTGCTACTGCTGCTGTTGCTGAAGCTGCACTTGCTGC TGCACAAGCGGCTGCTGAGGTTGTTAGATTGACTAGTGGTGGTTGTGGTGGTGGTGGTGGTGGTAATGTTCTTGGTGGCAGTCACCGCCGGTTTGTGGAG GAAGTGTCGGCGGTTAAAATTCAATCTGCCTTTCGTGGTTATTTGGCAAGGAGGGCACTAAGGGCACTAAAAGCATTGGTGAAGCTTCAAGCGTTAGTGA GAGGCCACATTGTGAGAAAGCAAACAGCAGACATGCTTAGGCGTATGCAAACATTAGTGAGACTGCAGGCTCGAGCCCGTGCTAGTCGCAGTCATGTGTC CGACTCTTGGCATACTACTAGCAAGTCCTCCCATTCTCGATATGCTGTCCCAGCAAGTCCTTCCAAGGATCACCTGTTTCGTGCTTCTAGTACCAAATTT GATGGCCCCTCAATTCTCAAGAGATGTGGTTCAAATGCAAACTTTAGGGAGAGCATTGACTTTGACAAAGTAAAATTGGGTTCAAATTGGCTAGAACGTT GGATGGAAGAAAGTTTATGGAATGACCATGGCAGCAATCCACTGAGAAATCGACATGCTGATGACGAGAGGAGTGACAAGATCCTTGAAGTAGACACTTG GAAGCCCCATGTGAAATCCCAACAAAGTAATCGAACATTTCAGACTTCACAGCATGCTTTGGCTTCAGATCATAACAATCAGATCTTTATGACATTTGAC TCTCCATCAAAAATATCAAAAAAAGCACCAAATCCAATGCCGAGCATCCCTTCAGGAGAAATTTTGTACTCTCTTAAATTACCCCTAGGAAATGATGAAG CAGTTTCAAGGACAGCTGAGAATAGCCCTCGTCTGTTTTCTGCAACATCTAGACCTGGAAGTAGTGGTAGAAAAGGTGGAGGCCATTTTACGCCCACAAG GAGTGAGTGCTCTTGGGGCTTCTTTAATGGATACCCGGGTTACCCCAACTACATGTCTAACACAGAATCATCTCGAGCCAAGGTTAGGTCACAAAGTGCC CCAAGGCAGAGGCTTGAGTTTGAGAAATACGGTTCAAGCAGAAGATCTGTTCAAGGGTATTATGATGCAGACATTCGATCAGAAAGGGGTTTTGCTCAAA ATACTGAACTTCCTTCTGGCTACTCGAATAGATTAGGAACTTCCAACTTAAGGTGA
AA sequence Show only first row Show all	>Potri.015G142200.1 pacid=42775806 polypeptide=Potri.015G142200.1.p locus=Potri.015G142200 ID=Potri.015G142200.1.v4.1 annot-version=v4.1 MGFFRRLFGAKKKSRSSKTTPSLSQSKKVDQILLSTTPYDANNLDANKHAIAVAAATAAVAEAALAAAQAAAEVVRLTSGGCGGGGGGNVLGGSHRRFVE EVSAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQARARASRSHVSDSWHTTSKSSHSRYAVPASPSKDHLFRASSTKF DGPSILKRCGSNANFRESIDFDKVKLGSNWLERWMEESLWNDHGSNPLRNRHADDERSDKILEVDTWKPHVKSQQSNRTFQTSQHALASDHNNQIFMTFD SPSKISKKAPNPMPSIPSGEILYSLKLPLGNDEAVSRTAENSPRLFSATSRPGSSGRKGGGHFTPTRSECSWGFFNGYPGYPNYMSNTESSRAKVRSQSA PRQRLEFEKYGSSRRSVQGYYDADIRSERGFAQNTELPSGYSNRLGTSNLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.015G142200 [exp]	0	1
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.001G415600 [exp]	2.44	0.7303
AT1G79720			Eukaryotic aspartyl protease f...		Potri.001G041700 [exp]	4.58	0.7378
AT4G37820			unknown protein		Potri.002G112800 [exp]	12.00	0.6718
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G229600 [exp]	18.52	0.6299
AT5G02560		HTA12	histone H2A 12 (.1.2)		Potri.006G082300 [exp]	20.12	0.7139
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	26.83	0.6947
AT4G34220			Leucine-rich repeat protein ki...		Potri.001G300700 [exp]	32.95	0.7075
AT5G39530			Protein of unknown function (D...		Potri.017G087500 [exp]	34.91	0.6618
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Potri.003G218600 [exp]	35.32	0.5761
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.002G120400 [exp]	35.46	0.6418

Compare expression of checked genes

Potri.015G142200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.