Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22950 351 / 8e-126 ATARFC1 ADP-ribosylation factor C1 (.1.2) AT1G70490 212 / 1e-70 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 212 / 1e-70 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G10630 209 / 8e-70 ATARFA1F ADP-ribosylation factor A1F (.1) AT3G62290 209 / 2e-69 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G47170 209 / 2e-69 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G14670 207 / 9e-69 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G24765 192 / 7e-63 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G17060 187 / 8e-61 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 185 / 5e-60 ATARFB1C ADP-ribosylation factor B1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G139900 [exp] 368 / 3e-132 AT3G22950 349 / 6e-125 ADP-ribosylation factor C1 (.1.2) Potri.005G142100 [exp] 210 / 6e-70 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 210 / 8e-70 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 210 / 8e-70 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 210 / 8e-70 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 209 / 8e-70 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 209 / 8e-70 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 209 / 1e-69 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 209 / 1e-69 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006632 [exp] 362 / 5e-130 AT3G22950 358 / 2e-128 ADP-ribosylation factor C1 (.1.2) Lus10039392 [exp] 359 / 6e-129 AT3G22950 355 / 2e-127 ADP-ribosylation factor C1 (.1.2) Lus10030884 [exp] 208 / 7e-69 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 210 / 2e-68 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 208 / 2e-68 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10031436 [exp] 206 / 3e-68 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 208 / 1e-65 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 207 / 3e-62 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10009571 [exp] 187 / 8e-61 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10020392 [exp] 186 / 5e-60 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08477 [poplar] [flax] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Potri.015G142600.1 pacid=42775491 polypeptide=Potri.015G142600.1.p locus=Potri.015G142600 ID=Potri.015G142600.1.v4.1 annot-version=v4.1 ATGGGAGCATTTGCATCAAGGTTTTGGTTCATGTTGTTTCCAGCAAAGGAGTACAAGATTGTGGTAGTTGGGTTAGATAATGCTGGAAAGACAACTACGC TTTACAAATTGCATTTAGGGGAGGTTGTAACTACTCACCCTACTGTTGGTAGCAATGTTGAAGAGCTTGTCTACAAGAATATTCGATTCGAGGTCTGGGA TCTTGGTGGACAAGATAGGCTCAGGACTTCATGGGCAACGTATTATCGTGGAACTCATGCTGTCATAGCGGTGATAGACAGCACTGATAGAGACAGGATA TCCATTATGAAGGACGAAATTTTTAGGCTGCTGGGACATGATGATTTACAACATTCTGTTATACTCGTCTTCGCAAATAAACAAGACCTCAAGGATGCCA TGACACCAGCCGAGATTACTGATGCTCTCTCTCTTCACAGCATCAAGAATCATGATTGGCATATCCAAGCTTGTTGTGCCCTTACAGGGGACGGTCTACA CGATGGTCTAGGTTGGATTGCTCAAAGAGTTACTGGCAAAGCACCAAGTTGA
AA sequence Show only first row Show all	>Potri.015G142600.1 pacid=42775491 polypeptide=Potri.015G142600.1.p locus=Potri.015G142600 ID=Potri.015G142600.1.v4.1 annot-version=v4.1 MGAFASRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEVWDLGGQDRLRTSWATYYRGTHAVIAVIDSTDRDRI SIMKDEIFRLLGHDDLQHSVILVFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACCALTGDGLHDGLGWIAQRVTGKAPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.015G142600 [exp]	0	1
AT2G25310			Protein of unknown function (D...		Potri.018G024600 [exp]	1.73	0.8600
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.002G034200 [exp]	2.44	0.8378	Pt-RER1.5
AT3G28715			ATPase, V0/A0 complex, subunit...		Potri.017G079200 [exp]	4.89	0.8436
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.001G293100 [exp]	5.00	0.8336
AT1G12440			A20/AN1-like zinc finger famil...		Potri.003G117100 [exp]	8.77	0.8122
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.009G087400 [exp]	8.94	0.7886
AT2G30942			Protein of unknown function (D...		Potri.001G000400 [exp]	10.39	0.8118
AT2G36300			Integral membrane Yip1 family ...		Potri.004G190800 [exp]	11.61	0.8142
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Potri.009G004500 [exp]	13.11	0.8338
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.010G039700 [exp]	18.54	0.8193	Pt-PP2.1

Compare expression of checked genes

Potri.015G142600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.