Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47640 170 / 2e-52 bHLH PYE, bHLH047, POPEYE, PYE1 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G19860 84 / 3e-19 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 82 / 2e-18 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23210 70 / 9e-14 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G14410 66 / 1e-12 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G54680 62 / 2e-11 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51070 48 / 2e-06 bHLH bHLH115 basic Helix-Loop-Helix 115, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074400 [exp] 303 / 2e-105 AT3G47640 158 / 5e-48 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G129600 [exp] 89 / 8e-21 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 87 / 8e-20 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G113400 [exp] 78 / 9e-17 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G132400 [exp] 60 / 2e-10 AT5G54680 222 / 7e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G031000 [exp] 57 / 2e-09 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G031800 [exp] 45 / 1e-05 AT5G54680 226 / 8e-75 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024233 [exp] 205 / 4e-66 AT3G47640 187 / 4e-59 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10008622 [exp] 105 / 3e-28 AT3G47640 100 / 6e-27 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10042194 [exp] 100 / 6e-27 AT3G47640 94 / 1e-24 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10028456 [exp] 69 / 2e-13 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041908 [exp] 67 / 7e-13 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10022186 [exp] 62 / 2e-11 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10011167 [exp] 62 / 3e-11 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043076 [exp] 61 / 4e-11 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021199 [exp] 56 / 2e-09 AT4G14410 221 / 2e-72 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041148 [exp] 42 / 0.0001 AT4G14410 211 / 1e-68 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G142700.1 pacid=42776135 polypeptide=Potri.015G142700.1.p locus=Potri.015G142700 ID=Potri.015G142700.1.v4.1 annot-version=v4.1 ATGAGCACGGGCTCAGAGCCTGATGTAACAGTGGAGGAGGTGACTGGAAATCGGAGCTTTCCTGCTGGGAAGAATAAGGGGAAAGTCCCGAGAAGAATTC ATAAAGCTGAGAGGGAGAAGCTGAAGCGTGAGCAATTGAATGAGCTCTTTCTTGACTTGGCCTCTGCTCTTGAGTTGAGTGAGCCAAATACTGGAAAGGC TTCTATACTGTGTGAAACGACTCGGCTATTAAAGGACTTGCTTACACAGATTGAGTCCCTCAAAAAGGATAATGTAGCTCTCTTATCTGAATCTCGCTAT GTAACTGTTGAGAAAAATGAGCTGAGGGAGGAGAATTCTGTCCTAGAAAATCAAATTGGGAAACTGCAGGGTGAACTGGAATCGAGAGTGGCTGCGCAAT CAACACCTGTCCTAAACGTGCCGCCTCCAGAATTTCAGCAACCGCCACATTTTCCAGGAGACTCGTTCAGATTGCCTGCTGTGGATGCTGCTGCTGCTGC ATTGCAGCAGACGCCAGCTGTCTTTGTGGTTCCTATCCGTCCTGATCATGTGCAAGGTCTTCCAATGGCCACCTCGAATGTGAGGAAACCACATGCTAGA TATCCAACCGCTGCTGATTCTTGGCCGTCTCAACTTCTTGGAGAGCAGCAAATTGCTAGGAAGGAAGTTCAGTTTAGTGGCAAGGATAGCGCTATCTGTA ATCCTGGGGAACGATGCCATCCTTAA
AA sequence Show only first row Show all	>Potri.015G142700.1 pacid=42776135 polypeptide=Potri.015G142700.1.p locus=Potri.015G142700 ID=Potri.015G142700.1.v4.1 annot-version=v4.1 MSTGSEPDVTVEEVTGNRSFPAGKNKGKVPRRIHKAEREKLKREQLNELFLDLASALELSEPNTGKASILCETTRLLKDLLTQIESLKKDNVALLSESRY VTVEKNELREENSVLENQIGKLQGELESRVAAQSTPVLNVPPPEFQQPPHFPGDSFRLPAVDAAAAALQQTPAVFVVPIRPDHVQGLPMATSNVRKPHAR YPTAADSWPSQLLGEQQIARKEVQFSGKDSAICNPGERCHP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Potri.015G142700 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Potri.009G091600 [exp]	4.24	0.7137
AT1G10040			alpha/beta-Hydrolases superfam...		Potri.002G113000 [exp]	20.68	0.6962
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Potri.018G050800 [exp]	31.74	0.5632	Pt-MEK1.2
AT1G59650		CW14	Protein of unknown function (D...		Potri.017G074800 [exp]	34.58	0.5819
AT5G10695			unknown protein		Potri.018G007300 [exp]	36.26	0.6062
AT1G23149		CPuORF29	conserved peptide upstream ope...		Potri.008G131550 [exp]	40.48	0.5844
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.004G190600 [exp]	147.07	0.5088
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.009G155800 [exp]	163.15	0.5029
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036500 [exp]	265.85	0.4806

Compare expression of checked genes

Potri.015G142700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.