Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48900 609 / 0 single-stranded DNA endonuclease family protein (.1.2) AT1G01880 124 / 9e-30 5'-3' exonuclease family protein (.1.2) AT3G28030 123 / 6e-29 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT5G26680 63 / 2e-10 5'-3' exonuclease family protein (.1.2) AT1G29630 52 / 1e-06 5'-3' exonuclease family protein (.1.2.3) AT1G18090 45 / 0.0002 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077300 [exp] 108 / 1e-24 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.017G070500 [exp] 108 / 2e-24 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.013G000700 [exp] 57 / 2e-08 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.002G152801 [exp] 52 / 9e-07 AT1G01880 190 / 7e-55 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 47 / 4e-05 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005744 [exp] 694 / 0 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10027451 [exp] 692 / 0 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10039424 [exp] 119 / 2e-27 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10041375 [exp] 116 / 3e-27 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10036554 [exp] 102 / 1e-22 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039423 [exp] 63 / 1e-10 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10000270 [exp] 53 / 4e-07 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0464 [poplar] [flax] 5_3_exonuc_C PF00867 [poplar] [flax] XPG_I XPG I-region
Representative CDS sequence Show only first row Show all	>Potri.015G142800.4 pacid=42775707 polypeptide=Potri.015G142800.4.p locus=Potri.015G142800 ID=Potri.015G142800.4.v4.1 annot-version=v4.1 ATGGGAGTGAAGAACTTATGGGACATCTTAGAATCATGCAAGAAGACCCTGCCGCTTCACCATCTCCAGAACAAAAGGGTTTGTATAGATCTGTCTTGTT GGATGGTTCAACTCCAAAATGTAAACAAAACACACTGCGGATTGGTTAAAGACAAGCCCTATATTAGGAATCTGTTTCATCGCCTAAGAGCTCTCATTGC TTTGAATTGCAGCCTTATTTTTGTTGCTGATGGATCAATCCCTGCTATCAAATTAGCCACTTACCGTCGGCGCTTGAATTTAGGACTTGAGGTTACCCAA GATGAAACAAATTCACAAAAAGCTTGCTCACTTCGGAGAAACATGGGATCAGAGTTCTCATGCATGATCAAAGAAGCAAAAGATATTGGATTAGCACTTG GGATCCCTTGCTTAGATAGCATTGAGGAAGCTGAAGCACAGTGTGCATTGTTAAACACAGAATCATTGTGTGATGGTTGTTTCAGCTCAGATTCAGATGT CTTCCTTTTTGGTGCAAGGACCGTGTACAGAGACATATGTCTTGGAGAAGGACATGTTGTTTGTTATGAAATGGAAGAAGTAGAAAGAAAACTTGGGTTT GGGAGGAACTCGTTGATCACGCTAGCCCTTATACTTGGAAGTGATTACTCTCCAGGAGTGCATGGCCTAGGTCCAGTATGTTTGGTGGAGTCAGCATGCC AAATTGTCAAGTCAATTGGAGATAGCAATGTCCTTCAAAAAATTGCATCAGAGGGACTGCCCTTTGCAAAGAAGATAAAAACTTCAAAGAAGCAGATGCG CAGTAAAAAAACAAACTCTCTGGATTCTGAAATCCATTTTAATGGAAGCGATAACAATTCAGAAAGGAAGAATGAGTGCTTGCAAGTGATTAATGCATAT CTGAAGCCCAAGTGCCACCCAGCAGATTCTGATGCAGCCTGTAGGGTTCTTTCTCAGCATCCATTTCAACGTCTCAAACTTCAAGGGATATGTGCTCAGT TCTTTGGGTGGCCTCCAGAGAAAACAGATGAGTACACCCTTCCAAAAATTGCTGAAAGAGACTTGCGGAGATTTGCCAATCTGCGATCAACTTCATCAGA GTTAGGAGTTAATCTTCCTCTGCAAAAGATACCAGTTAAGTGCCCTGTATCTGGAGTTGTTAAACAGAGAAAGGTTCAGGGAACAGAATGCTTTGAGGTG TTGTGGGAAGGGTTTGATGGACTTAAAACCTCCATAGTTCCAGCAGATCTCTTAGAGAGTGCTTGTCCGGAAAAGATTGCAGAGTTTGAGGAGAAAACAG CTTTGGGAAAGAAACAAAATCAACGCAAACCTGGATCAAAGAAATCAGGAAACAGGCTTGCTATGGCCGAAATTGATTTAAAACTCCAAACTTTGCTGCT TGACATTGAACCAGGAAGCAATACTGCCTGTAGCACCTCCTTGTCATCAAAAGCAGCAATTTCAGAAGATAGGACTACTTCAACTGCGGCTAGTCATACA AAACTAGATCCACGTAATGCTGGTTGTAGAGCTGCCTTGTTTACTGATACCAGTCAGTATGAGGTCATTGATCTCTGTAGCCCCTCTCCCGTAGCCCGAA CTCGTACTGTTTCAAGATGTCAACGAGTGAATGATCAACATAGTGAGGTGATAGATTTGAGTGAATCAGAGAATGAAATGTCACCTGAACATGCAAGGAA GGCAAGAGCGCTTAGAATGTTTATAGCCAGTATTAGGGATGATATGTCATGA
AA sequence Show only first row Show all	>Potri.015G142800.4 pacid=42775707 polypeptide=Potri.015G142800.4.p locus=Potri.015G142800 ID=Potri.015G142800.4.v4.1 annot-version=v4.1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWMVQLQNVNKTHCGLVKDKPYIRNLFHRLRALIALNCSLIFVADGSIPAIKLATYRRRLNLGLEVTQ DETNSQKACSLRRNMGSEFSCMIKEAKDIGLALGIPCLDSIEEAEAQCALLNTESLCDGCFSSDSDVFLFGARTVYRDICLGEGHVVCYEMEEVERKLGF GRNSLITLALILGSDYSPGVHGLGPVCLVESACQIVKSIGDSNVLQKIASEGLPFAKKIKTSKKQMRSKKTNSLDSEIHFNGSDNNSERKNECLQVINAY LKPKCHPADSDAACRVLSQHPFQRLKLQGICAQFFGWPPEKTDEYTLPKIAERDLRRFANLRSTSSELGVNLPLQKIPVKCPVSGVVKQRKVQGTECFEV LWEGFDGLKTSIVPADLLESACPEKIAEFEEKTALGKKQNQRKPGSKKSGNRLAMAEIDLKLQTLLLDIEPGSNTACSTSLSSKAAISEDRTTSTAASHT KLDPRNAGCRAALFTDTSQYEVIDLCSPSPVARTRTVSRCQRVNDQHSEVIDLSESENEMSPEHARKARALRMFIASIRDDMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48900			single-stranded DNA endonuclea...		Potri.015G142800 [exp]	0	1
AT4G26310			elongation factor P (EF-P) fam...		Potri.001G004300 [exp]	4.35	0.7595
AT1G16650			S-adenosyl-L-methionine-depend...		Potri.007G065300 [exp]	7.07	0.7444
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.002G181700 [exp]	14.38	0.7204
AT4G13720			Inosine triphosphate pyrophosp...		Potri.003G175800 [exp]	19.62	0.7159
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Potri.001G070301 [exp]	20.19	0.7206
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Potri.011G089500 [exp]	20.73	0.7186
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Potri.004G156000 [exp]	22.97	0.5955
AT5G59960			unknown protein		Potri.001G237000 [exp]	24.69	0.7301
AT2G29590			Thioesterase superfamily prote...		Potri.009G042100 [exp]	28.46	0.6997
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Potri.005G118600 [exp]	30.39	0.6431	Pt-UBC17.2

Compare expression of checked genes

Potri.015G142800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.